Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
741 | 3' | -51.9 | AC_000020.1 | + | 12234 | 0.66 | 0.780869 |
Target: 5'- gGCGGUccucgGugACCAugccACCUGGGGGCu- -3' miRNA: 3'- -CGUCA-----CugUGGUuu--UGGGCCUCUGcg -5' |
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741 | 3' | -51.9 | AC_000020.1 | + | 229 | 0.66 | 0.780869 |
Target: 5'- -----aACGCCcaAAAACCCGG-GGCGCc -3' miRNA: 3'- cgucacUGUGG--UUUUGGGCCuCUGCG- -5' |
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741 | 3' | -51.9 | AC_000020.1 | + | 11328 | 0.66 | 0.770251 |
Target: 5'- uGCGGUuaggGAC-CCAAGguuGCCCGuGGcGAUGCg -3' miRNA: 3'- -CGUCA----CUGuGGUUU---UGGGC-CU-CUGCG- -5' |
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741 | 3' | -51.9 | AC_000020.1 | + | 14187 | 0.66 | 0.767034 |
Target: 5'- gGCAGcaaagGGCGCCGccgccgucaaggccGAGCCCGcGGGGCc- -3' miRNA: 3'- -CGUCa----CUGUGGU--------------UUUGGGC-CUCUGcg -5' |
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741 | 3' | -51.9 | AC_000020.1 | + | 19998 | 0.66 | 0.759474 |
Target: 5'- -aAGUGACACaccuAUCCGGGcuggaggcuauGGCGCu -3' miRNA: 3'- cgUCACUGUGguuuUGGGCCU-----------CUGCG- -5' |
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741 | 3' | -51.9 | AC_000020.1 | + | 14239 | 0.66 | 0.745247 |
Target: 5'- gGCGGcGGCGCCcuuugcugccccacGAGGCCCGGuAGugaGCu -3' miRNA: 3'- -CGUCaCUGUGG--------------UUUUGGGCC-UCug-CG- -5' |
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741 | 3' | -51.9 | AC_000020.1 | + | 15874 | 0.67 | 0.715041 |
Target: 5'- cCAGUGcGCACCAAAAUUac-AGGCGCa -3' miRNA: 3'- cGUCAC-UGUGGUUUUGGgccUCUGCG- -5' |
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741 | 3' | -51.9 | AC_000020.1 | + | 27179 | 0.68 | 0.657535 |
Target: 5'- aCGGUGAgACCcGAGCCUacuuGGAGGCu- -3' miRNA: 3'- cGUCACUgUGGuUUUGGG----CCUCUGcg -5' |
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741 | 3' | -51.9 | AC_000020.1 | + | 31090 | 0.69 | 0.599354 |
Target: 5'- gGCAca-ACGCCcaAAAACCCGG-GGCGCc -3' miRNA: 3'- -CGUcacUGUGG--UUUUGGGCCuCUGCG- -5' |
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741 | 3' | -51.9 | AC_000020.1 | + | 15145 | 0.69 | 0.553298 |
Target: 5'- uGCAGacuguaGACAUCAAAguGCCCGuGAaGCGCa -3' miRNA: 3'- -CGUCa-----CUGUGGUUU--UGGGC-CUcUGCG- -5' |
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741 | 3' | -51.9 | AC_000020.1 | + | 26675 | 0.69 | 0.553298 |
Target: 5'- gGUuGUGugG--AAGACCCGGGGGCGUc -3' miRNA: 3'- -CGuCACugUggUUUUGGGCCUCUGCG- -5' |
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741 | 3' | -51.9 | AC_000020.1 | + | 14278 | 0.71 | 0.47568 |
Target: 5'- -aGGUGGCGCgCAAcgguccCCCGGcGGCGCg -3' miRNA: 3'- cgUCACUGUG-GUUuu----GGGCCuCUGCG- -5' |
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741 | 3' | -51.9 | AC_000020.1 | + | 15672 | 0.96 | 0.010471 |
Target: 5'- cGCAGaGuCACCAAAACCCGGAGACGCc -3' miRNA: 3'- -CGUCaCuGUGGUUUUGGGCCUCUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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