miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
741 3' -51.9 AC_000020.1 + 12234 0.66 0.780869
Target:  5'- gGCGGUccucgGugACCAugccACCUGGGGGCu- -3'
miRNA:   3'- -CGUCA-----CugUGGUuu--UGGGCCUCUGcg -5'
741 3' -51.9 AC_000020.1 + 229 0.66 0.780869
Target:  5'- -----aACGCCcaAAAACCCGG-GGCGCc -3'
miRNA:   3'- cgucacUGUGG--UUUUGGGCCuCUGCG- -5'
741 3' -51.9 AC_000020.1 + 11328 0.66 0.770251
Target:  5'- uGCGGUuaggGAC-CCAAGguuGCCCGuGGcGAUGCg -3'
miRNA:   3'- -CGUCA----CUGuGGUUU---UGGGC-CU-CUGCG- -5'
741 3' -51.9 AC_000020.1 + 14187 0.66 0.767034
Target:  5'- gGCAGcaaagGGCGCCGccgccgucaaggccGAGCCCGcGGGGCc- -3'
miRNA:   3'- -CGUCa----CUGUGGU--------------UUUGGGC-CUCUGcg -5'
741 3' -51.9 AC_000020.1 + 19998 0.66 0.759474
Target:  5'- -aAGUGACACaccuAUCCGGGcuggaggcuauGGCGCu -3'
miRNA:   3'- cgUCACUGUGguuuUGGGCCU-----------CUGCG- -5'
741 3' -51.9 AC_000020.1 + 14239 0.66 0.745247
Target:  5'- gGCGGcGGCGCCcuuugcugccccacGAGGCCCGGuAGugaGCu -3'
miRNA:   3'- -CGUCaCUGUGG--------------UUUUGGGCC-UCug-CG- -5'
741 3' -51.9 AC_000020.1 + 15874 0.67 0.715041
Target:  5'- cCAGUGcGCACCAAAAUUac-AGGCGCa -3'
miRNA:   3'- cGUCAC-UGUGGUUUUGGgccUCUGCG- -5'
741 3' -51.9 AC_000020.1 + 27179 0.68 0.657535
Target:  5'- aCGGUGAgACCcGAGCCUacuuGGAGGCu- -3'
miRNA:   3'- cGUCACUgUGGuUUUGGG----CCUCUGcg -5'
741 3' -51.9 AC_000020.1 + 31090 0.69 0.599354
Target:  5'- gGCAca-ACGCCcaAAAACCCGG-GGCGCc -3'
miRNA:   3'- -CGUcacUGUGG--UUUUGGGCCuCUGCG- -5'
741 3' -51.9 AC_000020.1 + 26675 0.69 0.553298
Target:  5'- gGUuGUGugG--AAGACCCGGGGGCGUc -3'
miRNA:   3'- -CGuCACugUggUUUUGGGCCUCUGCG- -5'
741 3' -51.9 AC_000020.1 + 15145 0.69 0.553298
Target:  5'- uGCAGacuguaGACAUCAAAguGCCCGuGAaGCGCa -3'
miRNA:   3'- -CGUCa-----CUGUGGUUU--UGGGC-CUcUGCG- -5'
741 3' -51.9 AC_000020.1 + 14278 0.71 0.47568
Target:  5'- -aGGUGGCGCgCAAcgguccCCCGGcGGCGCg -3'
miRNA:   3'- cgUCACUGUG-GUUuu----GGGCCuCUGCG- -5'
741 3' -51.9 AC_000020.1 + 15672 0.96 0.010471
Target:  5'- cGCAGaGuCACCAAAACCCGGAGACGCc -3'
miRNA:   3'- -CGUCaCuGUGGUUUUGGGCCUCUGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.