miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
741 5' -53.5 AC_000020.1 + 15706 1.11 0.000442
Target:  5'- cCAGAACCCGCCAGGCUUUUGUGCUGCc -3'
miRNA:   3'- -GUCUUGGGCGGUCCGAAAACACGACG- -5'
741 5' -53.5 AC_000020.1 + 1126 0.71 0.328394
Target:  5'- uCAGAACCCGCUucGGCUg--GaGCUGa -3'
miRNA:   3'- -GUCUUGGGCGGu-CCGAaaaCaCGACg -5'
741 5' -53.5 AC_000020.1 + 3104 0.67 0.552386
Target:  5'- aUAGGugGCCCGCaGGGaagggGUGCUGUg -3'
miRNA:   3'- -GUCU--UGGGCGgUCCgaaaaCACGACG- -5'
741 5' -53.5 AC_000020.1 + 30179 0.66 0.598832
Target:  5'- aGGGGCCCGCUGuGGCUggaaaGcCUGCg -3'
miRNA:   3'- gUCUUGGGCGGU-CCGAaaacaC-GACG- -5'
741 5' -53.5 AC_000020.1 + 23184 0.66 0.622291
Target:  5'- gAGGGCCUGCUAGaGCacuacUGccGCUGCa -3'
miRNA:   3'- gUCUUGGGCGGUC-CGaaa--ACa-CGACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.