miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
743 3' -53.1 AC_000020.1 + 10308 0.66 0.643886
Target:  5'- aCUGC-CCAgcucuuucuuaUAGUGcAACACUGCAGGg- -3'
miRNA:   3'- -GACGcGGU-----------AUCAU-UUGUGGCGUCCgg -5'
743 3' -53.1 AC_000020.1 + 15917 0.66 0.643886
Target:  5'- -gGCGCCcacgcGGcauACGCUGCGGGCg -3'
miRNA:   3'- gaCGCGGua---UCauuUGUGGCGUCCGg -5'
743 3' -53.1 AC_000020.1 + 27534 0.66 0.643886
Target:  5'- -gGgGCUGUAGUAGG---UGCAGGCCu -3'
miRNA:   3'- gaCgCGGUAUCAUUUgugGCGUCCGG- -5'
743 3' -53.1 AC_000020.1 + 10983 0.66 0.643886
Target:  5'- aCUGuCGUCGgcuGUAGGCugacuCUGCAuGGCCg -3'
miRNA:   3'- -GAC-GCGGUau-CAUUUGu----GGCGU-CCGG- -5'
743 3' -53.1 AC_000020.1 + 4806 0.66 0.63218
Target:  5'- gUGgGCCugcacgcUGGUGAGggucCugCGCAGGCUc -3'
miRNA:   3'- gACgCGGu------AUCAUUU----GugGCGUCCGG- -5'
743 3' -53.1 AC_000020.1 + 15358 0.66 0.631009
Target:  5'- -aGCGCC-------GCACCGCAGcuGCCa -3'
miRNA:   3'- gaCGCGGuaucauuUGUGGCGUC--CGG- -5'
743 3' -53.1 AC_000020.1 + 14800 0.67 0.620474
Target:  5'- -cGCGCCGaccccgccacUGGUAggGACGCCGgGGaGCa -3'
miRNA:   3'- gaCGCGGU----------AUCAU--UUGUGGCgUC-CGg -5'
743 3' -53.1 AC_000020.1 + 16744 0.67 0.573876
Target:  5'- -gGCGCCGggggggAGUAGGCugGCgGCuGGUCa -3'
miRNA:   3'- gaCGCGGUa-----UCAUUUG--UGgCGuCCGG- -5'
743 3' -53.1 AC_000020.1 + 7937 0.68 0.516901
Target:  5'- -gGCGCCGUAGUGGu--CCaGCGcGCCa -3'
miRNA:   3'- gaCGCGGUAUCAUUuguGG-CGUcCGG- -5'
743 3' -53.1 AC_000020.1 + 17631 0.69 0.499133
Target:  5'- --aUGCCAUGcuauacacugaagauGUAAAC-CUGCAGGCCc -3'
miRNA:   3'- gacGCGGUAU---------------CAUUUGuGGCGUCCGG- -5'
743 3' -53.1 AC_000020.1 + 17725 0.69 0.494733
Target:  5'- gCUGgGCCAgcAGgcuGCGCCcaaCAGGCCg -3'
miRNA:   3'- -GACgCGGUa-UCauuUGUGGc--GUCCGG- -5'
743 3' -53.1 AC_000020.1 + 21575 0.71 0.345268
Target:  5'- -gGCGCUucuuUGG-GGGCGCCGUAGGCg -3'
miRNA:   3'- gaCGCGGu---AUCaUUUGUGGCGUCCGg -5'
743 3' -53.1 AC_000020.1 + 14851 0.72 0.303176
Target:  5'- uCUG-GCCGggAGUAAACACCaCGGGCa -3'
miRNA:   3'- -GACgCGGUa-UCAUUUGUGGcGUCCGg -5'
743 3' -53.1 AC_000020.1 + 19765 1.13 0.000362
Target:  5'- cCUGCGCCAUAGUAAACACCGCAGGCCg -3'
miRNA:   3'- -GACGCGGUAUCAUUUGUGGCGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.