miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
743 5' -61.5 AC_000020.1 + 16739 0.66 0.257173
Target:  5'- cGGGGgGgaguagGCugGC-GGCUGGUCAgagGGCUu -3'
miRNA:   3'- -CCCCgCa-----CG--UGaCCGACCGGUa--CCGG- -5'
743 5' -61.5 AC_000020.1 + 7973 0.66 0.257173
Target:  5'- -aGGCcuGUGCugauccugaGCUGGgaGGCUagGGCCa -3'
miRNA:   3'- ccCCG--CACG---------UGACCgaCCGGuaCCGG- -5'
743 5' -61.5 AC_000020.1 + 8857 0.67 0.231731
Target:  5'- cGGGGUGcaggGCGCgGGuCUGGgCA-GGCUc -3'
miRNA:   3'- -CCCCGCa---CGUGaCC-GACCgGUaCCGG- -5'
743 5' -61.5 AC_000020.1 + 30179 0.67 0.202945
Target:  5'- aGGGGCccGCugUGGCUGGaaa--GCCu -3'
miRNA:   3'- -CCCCGcaCGugACCGACCgguacCGG- -5'
743 5' -61.5 AC_000020.1 + 17713 0.68 0.197574
Target:  5'- aGGG-GUGCAagGGCUgGGCCAgcaGGCUg -3'
miRNA:   3'- cCCCgCACGUgaCCGA-CCGGUa--CCGG- -5'
743 5' -61.5 AC_000020.1 + 30247 0.69 0.163352
Target:  5'- cGGGCuGUGCGCaGGCUuuccaGCCAcagcgGGCCc -3'
miRNA:   3'- cCCCG-CACGUGaCCGAc----CGGUa----CCGG- -5'
743 5' -61.5 AC_000020.1 + 24519 0.69 0.145872
Target:  5'- uGGGGCG-GCuucCUGaacaagcauggcaGCUGGCCAaauUGGCg -3'
miRNA:   3'- -CCCCGCaCGu--GAC-------------CGACCGGU---ACCGg -5'
743 5' -61.5 AC_000020.1 + 14377 0.7 0.123705
Target:  5'- cGGGGCGUGcCAUga--UGGCCAUGcGCg -3'
miRNA:   3'- -CCCCGCAC-GUGaccgACCGGUAC-CGg -5'
743 5' -61.5 AC_000020.1 + 3189 0.75 0.055329
Target:  5'- aGGGGCGcgGUACgUGGCUGuguauuuacaGCCAUGGaCCc -3'
miRNA:   3'- -CCCCGCa-CGUG-ACCGAC----------CGGUACC-GG- -5'
743 5' -61.5 AC_000020.1 + 19800 1.12 0.000058
Target:  5'- gGGGGCGUGCACUGGCUGGCCAUGGCCu -3'
miRNA:   3'- -CCCCGCACGUGACCGACCGGUACCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.