miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7430 3' -39 NC_001902.1 + 1367 0.66 0.999993
Target:  5'- --aGAUGGggGGAAGAAGGAUGcagagGAGGAu -3'
miRNA:   3'- cucCUACU--UUUUUUUCUUAUa----CUCCU- -5'
7430 3' -39 NC_001902.1 + 18070 0.66 0.999991
Target:  5'- uGAGG-UGggGGuuccugugguuaaguAGGAGggUggGAGGAa -3'
miRNA:   3'- -CUCCuACuuUU---------------UUUUCuuAuaCUCCU- -5'
7430 3' -39 NC_001902.1 + 13679 0.66 0.999989
Target:  5'- aGGGGuacUGAAAAuacugaaaAAAAGAGUGgaacccgGAGGAg -3'
miRNA:   3'- -CUCCu--ACUUUU--------UUUUCUUAUa------CUCCU- -5'
7430 3' -39 NC_001902.1 + 5944 0.66 0.999983
Target:  5'- gGAGGAUGGGcguGAAGugaucaucgcuAAGGAg--GAGGAg -3'
miRNA:   3'- -CUCCUACUU---UUUU-----------UUCUUauaCUCCU- -5'
7430 3' -39 NC_001902.1 + 7832 0.66 0.999975
Target:  5'- aGAGGuAUGAGGAAcuccuAGAAgcaucuguUGAGGAu -3'
miRNA:   3'- -CUCC-UACUUUUUuu---UCUUau------ACUCCU- -5'
7430 3' -39 NC_001902.1 + 26053 0.67 0.999964
Target:  5'- -uGGAUGggGAuAAAGAGUGgacaGAGa- -3'
miRNA:   3'- cuCCUACuuUUuUUUCUUAUa---CUCcu -5'
7430 3' -39 NC_001902.1 + 17112 0.67 0.999927
Target:  5'- uGAGGAgUGGGAGAAGAGGA----AGGGu -3'
miRNA:   3'- -CUCCU-ACUUUUUUUUCUUauacUCCU- -5'
7430 3' -39 NC_001902.1 + 22573 0.68 0.999807
Target:  5'- aAGGAcaUGuuGAAGAGG--UAUGAGGAc -3'
miRNA:   3'- cUCCU--ACuuUUUUUUCuuAUACUCCU- -5'
7430 3' -39 NC_001902.1 + 7149 0.68 0.999807
Target:  5'- cAGGuauUGAGAAGAcaagGGGggUGUGuGGGg -3'
miRNA:   3'- cUCCu--ACUUUUUU----UUCuuAUACuCCU- -5'
7430 3' -39 NC_001902.1 + 24207 0.68 0.999689
Target:  5'- uGGGcgGAGAuuauaaugaguugaaAAAAAGAAUuauggAUGAGGAg -3'
miRNA:   3'- cUCCuaCUUU---------------UUUUUCUUA-----UACUCCU- -5'
7430 3' -39 NC_001902.1 + 22144 0.69 0.999212
Target:  5'- -uGGGUGAuuGAAggucgaagcuGAAAGGAUGUGuAGGAg -3'
miRNA:   3'- cuCCUACU--UUU----------UUUUCUUAUAC-UCCU- -5'
7430 3' -39 NC_001902.1 + 6984 0.7 0.998363
Target:  5'- uGAGGggGAAuuuGAAGAugaacuUGAGGAg -3'
miRNA:   3'- -CUCCuaCUUuuuUUUCUuau---ACUCCU- -5'
7430 3' -39 NC_001902.1 + 8583 0.7 0.997946
Target:  5'- aGGGGUGG------GGGAUAUGGGGGa -3'
miRNA:   3'- cUCCUACUuuuuuuUCUUAUACUCCU- -5'
7430 3' -39 NC_001902.1 + 78 0.71 0.997444
Target:  5'- uGAGGAgGAAugacguGGAUGUGGGGGc -3'
miRNA:   3'- -CUCCUaCUUuuuuuuCUUAUACUCCU- -5'
7430 3' -39 NC_001902.1 + 2369 0.71 0.997444
Target:  5'- aGAGGAUcGAuuGAAAAGAGAGUuagaGAGGu -3'
miRNA:   3'- -CUCCUA-CU--UUUUUUUCUUAua--CUCCu -5'
7430 3' -39 NC_001902.1 + 10867 0.71 0.997444
Target:  5'- uGAGGAUGAGGAAGGAGcAGUAUcAGc- -3'
miRNA:   3'- -CUCCUACUUUUUUUUC-UUAUAcUCcu -5'
7430 3' -39 NC_001902.1 + 5705 0.71 0.995294
Target:  5'- cAGGGUGGAguuuucAAGAGGGAAUGguuUGAGGu -3'
miRNA:   3'- cUCCUACUU------UUUUUUCUUAU---ACUCCu -5'
7430 3' -39 NC_001902.1 + 9789 0.75 0.950902
Target:  5'- uGAGGGUGAuGAuAAAGAcgcUGAGGAa -3'
miRNA:   3'- -CUCCUACUuUUuUUUCUuauACUCCU- -5'
7430 3' -39 NC_001902.1 + 2061 0.78 0.868544
Target:  5'- uGAGGAUGAAA-GGAAGAGUA--AGGAg -3'
miRNA:   3'- -CUCCUACUUUuUUUUCUUAUacUCCU- -5'
7430 3' -39 NC_001902.1 + 171 1.01 0.084942
Target:  5'- aGAGGAUG-AAAAAAAGAAUAUGAGGAu -3'
miRNA:   3'- -CUCCUACuUUUUUUUCUUAUACUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.