miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7436 3' -58.6 NC_001902.1 + 21737 1.04 0.000265
Target:  5'- gUACCCCUCCAACCUGCCCCCUAUCAAg -3'
miRNA:   3'- -AUGGGGAGGUUGGACGGGGGAUAGUU- -5'
7436 3' -58.6 NC_001902.1 + 470 0.69 0.156947
Target:  5'- cACCCCaUCCuuCCUGUaUCCUGUCGAa -3'
miRNA:   3'- aUGGGG-AGGuuGGACGgGGGAUAGUU- -5'
7436 3' -58.6 NC_001902.1 + 9253 0.69 0.171187
Target:  5'- cACCCUUUCAACCUGUUCCUuugaaacaaUGUCAc -3'
miRNA:   3'- aUGGGGAGGUUGGACGGGGG---------AUAGUu -5'
7436 3' -58.6 NC_001902.1 + 9887 0.69 0.176184
Target:  5'- gGCCCUUCagAGCCUGCguaUCCUUGUCAAa -3'
miRNA:   3'- aUGGGGAGg-UUGGACG---GGGGAUAGUU- -5'
7436 3' -58.6 NC_001902.1 + 654 0.67 0.24688
Target:  5'- -uCCCCUCU--UCUGgCCCUUGUCAAc -3'
miRNA:   3'- auGGGGAGGuuGGACgGGGGAUAGUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.