miRNA display CGI


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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7437 3' -50.7 NC_001902.1 + 22077 0.95 0.010718
Target:  5'- aAUGAAGUGGUugGGGAUGAGAACUCCa -3'
miRNA:   3'- -UACUUCACCAcaCCCUACUCUUGAGG- -5'
7437 3' -50.7 NC_001902.1 + 8586 0.71 0.426204
Target:  5'- -aGAAGgGGUGgGGGAUauggGGGAAUUCCu -3'
miRNA:   3'- uaCUUCaCCACaCCCUA----CUCUUGAGG- -5'
7437 3' -50.7 NC_001902.1 + 19563 0.68 0.63339
Target:  5'- -gGAGGUGcGUGUGGGGU----ACUCUg -3'
miRNA:   3'- uaCUUCAC-CACACCCUAcucuUGAGG- -5'
7437 3' -50.7 NC_001902.1 + 21981 0.67 0.68158
Target:  5'- -gGAAGcucgGGUG-GGGGUGGGGuauggACUCUc -3'
miRNA:   3'- uaCUUCa---CCACaCCCUACUCU-----UGAGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.