miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7437 5' -58.6 NC_001902.1 + 10531 0.71 0.163462
Target:  5'- aGAGAGUCU---CCCCACCCCaUACa- -3'
miRNA:   3'- aCUCUCAGGuauGGGGUGGGG-GUGgg -5'
7437 5' -58.6 NC_001902.1 + 17877 0.69 0.221561
Target:  5'- aGAGGGgCCAUuaUCCACCCUgACCUa -3'
miRNA:   3'- aCUCUCaGGUAugGGGUGGGGgUGGG- -5'
7437 5' -58.6 NC_001902.1 + 8529 0.67 0.288809
Target:  5'- -uGGAGgaauucccCCAUAucCCCCACCCCuucugcagaugcCACCCu -3'
miRNA:   3'- acUCUCa-------GGUAU--GGGGUGGGG------------GUGGG- -5'
7437 5' -58.6 NC_001902.1 + 17980 0.66 0.344805
Target:  5'- uUGAGAGccucgggcagCCAaACUUC-CUCCCACCCu -3'
miRNA:   3'- -ACUCUCa---------GGUaUGGGGuGGGGGUGGG- -5'
7437 5' -58.6 NC_001902.1 + 22041 1.12 0.0001
Target:  5'- aUGAGAGUCCAUACCCCACCCCCACCCg -3'
miRNA:   3'- -ACUCUCAGGUAUGGGGUGGGGGUGGG- -5'
7437 5' -58.6 NC_001902.1 + 18832 0.67 0.274179
Target:  5'- gGAG-GUCCucaaugACCUCAUCCCCugUg -3'
miRNA:   3'- aCUCuCAGGua----UGGGGUGGGGGugGg -5'
7437 5' -58.6 NC_001902.1 + 20493 0.66 0.319084
Target:  5'- cGAGGGUcugcccccuugagCCAUcacaGCCgCACCCUUACUCg -3'
miRNA:   3'- aCUCUCA-------------GGUA----UGGgGUGGGGGUGGG- -5'
7437 5' -58.6 NC_001902.1 + 143 0.66 0.362173
Target:  5'- aUGAGGG-CCAUGgcCCCCACaUCCACg- -3'
miRNA:   3'- -ACUCUCaGGUAU--GGGGUGgGGGUGgg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.