miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7438 5' -42.9 NC_001902.1 + 25016 1.15 0.003951
Target:  5'- cCAAAAGAACUUCCUUCUAAAACCCCCu -3'
miRNA:   3'- -GUUUUCUUGAAGGAAGAUUUUGGGGG- -5'
7438 5' -42.9 NC_001902.1 + 24973 0.66 0.995643
Target:  5'- aGAAGGAAgUUCUUUUggc-GCCCaCCa -3'
miRNA:   3'- gUUUUCUUgAAGGAAGauuuUGGG-GG- -5'
7438 5' -42.9 NC_001902.1 + 22015 0.66 0.997048
Target:  5'- ----cGAGCUUCCaag-GAAAUCCCUc -3'
miRNA:   3'- guuuuCUUGAAGGaagaUUUUGGGGG- -5'
7438 5' -42.9 NC_001902.1 + 19014 0.66 0.995643
Target:  5'- --cAGGAACagCCUUCcccgGAuACCCCg -3'
miRNA:   3'- guuUUCUUGaaGGAAGa---UUuUGGGGg -5'
7438 5' -42.9 NC_001902.1 + 15070 0.79 0.531298
Target:  5'- uGAAAGAACUUCUUagUGAAAUCCCa -3'
miRNA:   3'- gUUUUCUUGAAGGAagAUUUUGGGGg -5'
7438 5' -42.9 NC_001902.1 + 3528 0.68 0.978662
Target:  5'- -cAAGGAACUUCacagaAAAGCCUCCa -3'
miRNA:   3'- guUUUCUUGAAGgaagaUUUUGGGGG- -5'
7438 5' -42.9 NC_001902.1 + 2170 0.67 0.992557
Target:  5'- ---uGGuGCUUCacgUUUAAGACCCCUu -3'
miRNA:   3'- guuuUCuUGAAGga-AGAUUUUGGGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.