Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
7439 | 5' | -43.5 | NC_001902.1 | + | 1109 | 0.66 | 0.989237 |
Target: 5'- -cUGUGCAaACAUUGcUGGGcGGUGCUc -3' miRNA: 3'- aaACAUGUaUGUAACuGCUC-UCAUGG- -5' |
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7439 | 5' | -43.5 | NC_001902.1 | + | 2835 | 0.67 | 0.983169 |
Target: 5'- -aUGUACAUGaugUGcUGGGGGUACUc -3' miRNA: 3'- aaACAUGUAUguaACuGCUCUCAUGG- -5' |
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7439 | 5' | -43.5 | NC_001902.1 | + | 2714 | 0.68 | 0.97788 |
Target: 5'- -cUGUAUGUACAUgaugUGcUGGGGGUACUc -3' miRNA: 3'- aaACAUGUAUGUA----ACuGCUCUCAUGG- -5' |
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7439 | 5' | -43.5 | NC_001902.1 | + | 23134 | 0.7 | 0.926036 |
Target: 5'- aUUUGUACuUACAUcucuugaGACGAGAGUGu- -3' miRNA: 3'- -AAACAUGuAUGUAa------CUGCUCUCAUgg -5' |
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7439 | 5' | -43.5 | NC_001902.1 | + | 2781 | 0.71 | 0.888109 |
Target: 5'- -aUGUAUGUACAUcGGCGAaGGUAUCc -3' miRNA: 3'- aaACAUGUAUGUAaCUGCUcUCAUGG- -5' |
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7439 | 5' | -43.5 | NC_001902.1 | + | 2640 | 1.11 | 0.005663 |
Target: 5'- cUUUGUACAUACAUUGACGAGAGUACCc -3' miRNA: 3'- -AAACAUGUAUGUAACUGCUCUCAUGG- -5' |
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7439 | 5' | -43.5 | NC_001902.1 | + | 2765 | 1.11 | 0.005663 |
Target: 5'- cUUUGUACAUACAUUGACGAGAGUACCc -3' miRNA: 3'- -AAACAUGUAUGUAACUGCUCUCAUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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