miRNA display CGI


Results 1 - 7 of 7 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7439 5' -43.5 NC_001902.1 + 1109 0.66 0.989237
Target:  5'- -cUGUGCAaACAUUGcUGGGcGGUGCUc -3'
miRNA:   3'- aaACAUGUaUGUAACuGCUC-UCAUGG- -5'
7439 5' -43.5 NC_001902.1 + 2835 0.67 0.983169
Target:  5'- -aUGUACAUGaugUGcUGGGGGUACUc -3'
miRNA:   3'- aaACAUGUAUguaACuGCUCUCAUGG- -5'
7439 5' -43.5 NC_001902.1 + 2714 0.68 0.97788
Target:  5'- -cUGUAUGUACAUgaugUGcUGGGGGUACUc -3'
miRNA:   3'- aaACAUGUAUGUA----ACuGCUCUCAUGG- -5'
7439 5' -43.5 NC_001902.1 + 23134 0.7 0.926036
Target:  5'- aUUUGUACuUACAUcucuugaGACGAGAGUGu- -3'
miRNA:   3'- -AAACAUGuAUGUAa------CUGCUCUCAUgg -5'
7439 5' -43.5 NC_001902.1 + 2781 0.71 0.888109
Target:  5'- -aUGUAUGUACAUcGGCGAaGGUAUCc -3'
miRNA:   3'- aaACAUGUAUGUAaCUGCUcUCAUGG- -5'
7439 5' -43.5 NC_001902.1 + 2640 1.11 0.005663
Target:  5'- cUUUGUACAUACAUUGACGAGAGUACCc -3'
miRNA:   3'- -AAACAUGUAUGUAACUGCUCUCAUGG- -5'
7439 5' -43.5 NC_001902.1 + 2765 1.11 0.005663
Target:  5'- cUUUGUACAUACAUUGACGAGAGUACCc -3'
miRNA:   3'- -AAACAUGUAUGUAACUGCUCUCAUGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.