miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
744 3' -58 AC_000020.1 + 14792 0.66 0.407204
Target:  5'- cCCCGCCAcugguaGGGACgCCg-GGGAGCa- -3'
miRNA:   3'- -GGGUGGUa-----CCCUGgGGagUUCUCGca -5'
744 3' -58 AC_000020.1 + 14425 0.66 0.397807
Target:  5'- gCCAUCAUGGcacGCCCCgCAGGGGUu- -3'
miRNA:   3'- gGGUGGUACCc--UGGGGaGUUCUCGca -5'
744 3' -58 AC_000020.1 + 31177 0.67 0.361643
Target:  5'- uUC-CCGUGGGAacaCCCUgAccAGGGCGUg -3'
miRNA:   3'- gGGuGGUACCCUg--GGGAgU--UCUCGCA- -5'
744 3' -58 AC_000020.1 + 147 0.67 0.361643
Target:  5'- uUC-CCGUGGGAacaCCCUgAccAGGGCGUg -3'
miRNA:   3'- gGGuGGUACCCUg--GGGAgU--UCUCGCA- -5'
744 3' -58 AC_000020.1 + 15314 0.67 0.361643
Target:  5'- gCCUcaACC-UGGGGCUCCUCA-GAGUa- -3'
miRNA:   3'- -GGG--UGGuACCCUGGGGAGUuCUCGca -5'
744 3' -58 AC_000020.1 + 7131 0.67 0.352107
Target:  5'- gCCACUAcuuUGGGACuagaaagCCCUgAAGAGCu- -3'
miRNA:   3'- gGGUGGU---ACCCUG-------GGGAgUUCUCGca -5'
744 3' -58 AC_000020.1 + 20080 1.09 0.000261
Target:  5'- uCCCACCAUGGGACCCCUCAAGAGCGUg -3'
miRNA:   3'- -GGGUGGUACCCUGGGGAGUUCUCGCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.