Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 7440 | 3' | -57.4 | NC_001902.1 | + | 8509 | 1.08 | 0.000245 |
|
Target: 5'- gGACGGAUCCCCCUAUAGGGUGGAGGAa -3' miRNA: 3'- -CUGCCUAGGGGGAUAUCCCACCUCCU- -5' |
|||||||
| 7440 | 3' | -57.4 | NC_001902.1 | + | 13836 | 0.66 | 0.397908 |
|
Target: 5'- uAUGGAaCCCCCc--AGGGUgaaacccuccaaGGAGGAg -3' miRNA: 3'- cUGCCUaGGGGGauaUCCCA------------CCUCCU- -5' |
|||||||
| 7440 | 3' | -57.4 | NC_001902.1 | + | 18932 | 0.67 | 0.334949 |
|
Target: 5'- aGGCGGggCUCCUUAaAGGuuagGGAGGAu -3' miRNA: 3'- -CUGCCuaGGGGGAUaUCCca--CCUCCU- -5' |
|||||||
| 7440 | 3' | -57.4 | NC_001902.1 | + | 21967 | 0.67 | 0.326572 |
|
Target: 5'- uGAgGGAUUUCCUUGgaagcucGGGUGGGGGu -3' miRNA: 3'- -CUgCCUAGGGGGAUau-----CCCACCUCCu -5' |
|||||||
| 7440 | 3' | -57.4 | NC_001902.1 | + | 22215 | 0.69 | 0.251358 |
|
Target: 5'- cGugGGAccaacgaccccUCCCCCaauaugaacuugUGUAGGGuUGGAuGGAg -3' miRNA: 3'- -CugCCU-----------AGGGGG------------AUAUCCC-ACCU-CCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home