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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7441 | 3' | -53 | NC_001902.1 | + | 11215 | 0.97 | 0.005909 |
Target: 5'- cCCCUCGAUcaUCCCUCCAUCCAACGAu -3' miRNA: 3'- -GGGAGCUAugAGGGAGGUAGGUUGCU- -5' |
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7441 | 3' | -53 | NC_001902.1 | + | 22314 | 0.67 | 0.611647 |
Target: 5'- gCCUUCGuuuaGUGCgcgggUUCUCCAUCCAACc- -3' miRNA: 3'- -GGGAGC----UAUGa----GGGAGGUAGGUUGcu -5' |
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7441 | 3' | -53 | NC_001902.1 | + | 21746 | 0.66 | 0.669885 |
Target: 5'- gCCUCGAaggUAC-CCCUCCAaCCuGCc- -3' miRNA: 3'- gGGAGCU---AUGaGGGAGGUaGGuUGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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