miRNA display CGI


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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7447 5' -47.7 NC_001909.1 + 11113 0.66 0.929232
Target:  5'- cGCAA-UGGACACccaGACAGCcaugauugccuugAAGAACa -3'
miRNA:   3'- -CGUUgACCUGUGuc-UUGUCG-------------UUCUUG- -5'
7447 5' -47.7 NC_001909.1 + 18462 0.66 0.909747
Target:  5'- gGCAACUGaacaacuuGACACcgaaAGGAC-GCAAGAAg -3'
miRNA:   3'- -CGUUGAC--------CUGUG----UCUUGuCGUUCUUg -5'
7447 5' -47.7 NC_001909.1 + 1934 1.13 0.00141
Target:  5'- aGCAACUGGACACAGAACAGCAAGAACu -3'
miRNA:   3'- -CGUUGACCUGUGUCUUGUCGUUCUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.