miRNA: 3'- -CGUUgACCUGUGuc-UUGUCG-------------UUCUUG- -5'
miRNA: 3'- -CGUUGAC--------CUGUG----UCUUGuCGUUCUUg -5'
miRNA: 3'- -CGUUGACCUGUGUCUUGUCGUUCUUG- -5'
Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 7447 | 5' | -47.7 | NC_001909.1 | + | 11113 | 0.66 | 0.929232 |
|
Target: 5'- cGCAA-UGGACACccaGACAGCcaugauugccuugAAGAACa -3' miRNA: 3'- -CGUUgACCUGUGuc-UUGUCG-------------UUCUUG- -5' |
|||||||
| 7447 | 5' | -47.7 | NC_001909.1 | + | 18462 | 0.66 | 0.909747 |
|
Target: 5'- gGCAACUGaacaacuuGACACcgaaAGGAC-GCAAGAAg -3' miRNA: 3'- -CGUUGAC--------CUGUG----UCUUGuCGUUCUUg -5' |
|||||||
| 7447 | 5' | -47.7 | NC_001909.1 | + | 1934 | 1.13 | 0.00141 |
|
Target: 5'- aGCAACUGGACACAGAACAGCAAGAACu -3' miRNA: 3'- -CGUUGACCUGUGUCUUGUCGUUCUUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home