miRNA display CGI


Results 1 - 4 of 4 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
746 3' -57.5 AC_000020.1 + 2261 0.66 0.386985
Target:  5'- uGCCGUGCuuaggccuaACCUGCCuGCUGGAGaagCAa -3'
miRNA:   3'- -CGGCACG---------UGGACGG-CGGUUUCca-GUa -5'
746 3' -57.5 AC_000020.1 + 16706 0.67 0.350818
Target:  5'- cCCG-GCGCCcagcGCCGUC-AGGGUCAc -3'
miRNA:   3'- cGGCaCGUGGa---CGGCGGuUUCCAGUa -5'
746 3' -57.5 AC_000020.1 + 4801 0.71 0.195665
Target:  5'- uGCaCGUGgGCCUGCaCGCUgguGAGGGUCc- -3'
miRNA:   3'- -CG-GCACgUGGACG-GCGG---UUUCCAGua -5'
746 3' -57.5 AC_000020.1 + 22317 1.08 0.000261
Target:  5'- cGCCGUGCACCUGCCGCCAAAGGUCAUa -3'
miRNA:   3'- -CGGCACGUGGACGGCGGUUUCCAGUA- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.