miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
746 5' -51.4 AC_000020.1 + 17320 0.66 0.751869
Target:  5'- aGGGCAuuguaggcgguGCC-GCUguaaGGCUugaaGGAGGGGCCu -3'
miRNA:   3'- -CCUGU-----------UGGaCGA----UCGA----UUUUCCCGGc -5'
746 5' -51.4 AC_000020.1 + 11068 0.66 0.740665
Target:  5'- --cCAGCCUGUUAGC-AAAA-GGCUGg -3'
miRNA:   3'- ccuGUUGGACGAUCGaUUUUcCCGGC- -5'
746 5' -51.4 AC_000020.1 + 15622 0.66 0.740665
Target:  5'- cGGCugaucuuGCCUGUaGGCUu--GGGGCCc -3'
miRNA:   3'- cCUGu------UGGACGaUCGAuuuUCCCGGc -5'
746 5' -51.4 AC_000020.1 + 2638 0.67 0.717889
Target:  5'- aGGAUuguACCUGCUcuauuauGCU-GGGGGGUCa -3'
miRNA:   3'- -CCUGu--UGGACGAu------CGAuUUUCCCGGc -5'
746 5' -51.4 AC_000020.1 + 7967 0.67 0.694721
Target:  5'- uGGCAaagGCCUGUgcugauccugAGCUGGGaggcuAGGGCCa -3'
miRNA:   3'- cCUGU---UGGACGa---------UCGAUUU-----UCCCGGc -5'
746 5' -51.4 AC_000020.1 + 24739 0.67 0.671272
Target:  5'- aGGACGAgcgagaccccCCUcCUAGCUGGAAuaugccgucGGGCCu -3'
miRNA:   3'- -CCUGUU----------GGAcGAUCGAUUUU---------CCCGGc -5'
746 5' -51.4 AC_000020.1 + 11430 0.67 0.670094
Target:  5'- uGGGC-ACCUcGCUuaccagcAGCUu-AAGGGCUGa -3'
miRNA:   3'- -CCUGuUGGA-CGA-------UCGAuuUUCCCGGC- -5'
746 5' -51.4 AC_000020.1 + 7772 0.68 0.635811
Target:  5'- -cACAACCUGCccGCccucaUAGAGGaGGCCGc -3'
miRNA:   3'- ccUGUUGGACGauCG-----AUUUUC-CCGGC- -5'
746 5' -51.4 AC_000020.1 + 4805 0.68 0.623966
Target:  5'- cGugGGCCUGCacGCUGGuGAGGGUCc -3'
miRNA:   3'- cCugUUGGACGauCGAUU-UUCCCGGc -5'
746 5' -51.4 AC_000020.1 + 12273 0.69 0.576785
Target:  5'- aGGACcGCCUagaGCUAGCU---GGGGUgGu -3'
miRNA:   3'- -CCUGuUGGA---CGAUCGAuuuUCCCGgC- -5'
746 5' -51.4 AC_000020.1 + 17458 0.69 0.565095
Target:  5'- uGGCAGCCUaGCagAGCUGGGGGaugcgucuGGCCGu -3'
miRNA:   3'- cCUGUUGGA-CGa-UCGAUUUUC--------CCGGC- -5'
746 5' -51.4 AC_000020.1 + 22355 1.11 0.000846
Target:  5'- uGGACAACCUGCUAGCUAAAAGGGCCGc -3'
miRNA:   3'- -CCUGUUGGACGAUCGAUUUUCCCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.