miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
747 5' -61.5 AC_000020.1 + 23204 1.07 0.00012
Target:  5'- cUGCCGCUGCAACCUCUGCACCCCCCAc -3'
miRNA:   3'- -ACGGCGACGUUGGAGACGUGGGGGGU- -5'
747 5' -61.5 AC_000020.1 + 15360 0.69 0.133042
Target:  5'- cGCCGCaccGCAGCUgccaGCGCCCCCg- -3'
miRNA:   3'- aCGGCGa--CGUUGGaga-CGUGGGGGgu -5'
747 5' -61.5 AC_000020.1 + 17149 0.66 0.22456
Target:  5'- cGCaGCUGCAAgCgCUGCgACCUCUCAg -3'
miRNA:   3'- aCGgCGACGUUgGaGACG-UGGGGGGU- -5'
747 5' -61.5 AC_000020.1 + 16259 0.67 0.207183
Target:  5'- aUGCCGCUcCAAa---UGC-CCCCCCAg -3'
miRNA:   3'- -ACGGCGAcGUUggagACGuGGGGGGU- -5'
747 5' -61.5 AC_000020.1 + 17770 0.69 0.153117
Target:  5'- aGCCuGCUGgccCAGCCcUUGCACCCCUg- -3'
miRNA:   3'- aCGG-CGAC---GUUGGaGACGUGGGGGgu -5'
747 5' -61.5 AC_000020.1 + 14239 0.69 0.148894
Target:  5'- gGCgGCgGCGcCCUUUGCugCCCCaCGa -3'
miRNA:   3'- aCGgCGaCGUuGGAGACGugGGGG-GU- -5'
747 5' -61.5 AC_000020.1 + 1249 0.7 0.12933
Target:  5'- aGuaGCUGCuGACCUCUuuCugCCCCCAg -3'
miRNA:   3'- aCggCGACG-UUGGAGAc-GugGGGGGU- -5'
747 5' -61.5 AC_000020.1 + 10852 0.71 0.105914
Target:  5'- cGCgCGCUcGCAacGCCUCcGCccgcuccgACCCCCCAc -3'
miRNA:   3'- aCG-GCGA-CGU--UGGAGaCG--------UGGGGGGU- -5'
747 5' -61.5 AC_000020.1 + 17305 0.73 0.077691
Target:  5'- gUGCCGCUGUAaggcuugaaggagggGCCUCUGUcuaggguACCCCUg- -3'
miRNA:   3'- -ACGGCGACGU---------------UGGAGACG-------UGGGGGgu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.