Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
750 | 5' | -49.2 | AC_000020.1 | + | 21031 | 0.66 | 0.888949 |
Target: 5'- aUAAGGC--UGCUCUGGcauccauguuGCCACACCa -3' miRNA: 3'- -GUUUUGuuGCGGGAUCau--------CGGUGUGG- -5' |
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750 | 5' | -49.2 | AC_000020.1 | + | 14237 | 0.66 | 0.872394 |
Target: 5'- --cGGCGGCGCCCUuu--GCUGCcCCa -3' miRNA: 3'- guuUUGUUGCGGGAucauCGGUGuGG- -5' |
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750 | 5' | -49.2 | AC_000020.1 | + | 14868 | 0.66 | 0.854654 |
Target: 5'- uGAGGCggUGCCCgaccucUGGCCgggaguaaACACCa -3' miRNA: 3'- gUUUUGuuGCGGGauc---AUCGG--------UGUGG- -5' |
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750 | 5' | -49.2 | AC_000020.1 | + | 3352 | 0.67 | 0.845363 |
Target: 5'- aAAGugGACGCCCgcuuGcAGCCccgcGCAUCa -3' miRNA: 3'- gUUUugUUGCGGGau--CaUCGG----UGUGG- -5' |
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750 | 5' | -49.2 | AC_000020.1 | + | 26617 | 0.67 | 0.845363 |
Target: 5'- ---uACGACGCCCccgGGUcuuCCACACa -3' miRNA: 3'- guuuUGUUGCGGGa--UCAuc-GGUGUGg -5' |
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750 | 5' | -49.2 | AC_000020.1 | + | 27393 | 0.67 | 0.845363 |
Target: 5'- -cAGACAagcccGCGCCUacuuGUAGCgACACUg -3' miRNA: 3'- guUUUGU-----UGCGGGau--CAUCGgUGUGG- -5' |
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750 | 5' | -49.2 | AC_000020.1 | + | 8937 | 0.67 | 0.835805 |
Target: 5'- aAAAGCAuaauuaGCGCCCUG--AGCCugcccagacccGCGCCc -3' miRNA: 3'- gUUUUGU------UGCGGGAUcaUCGG-----------UGUGG- -5' |
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750 | 5' | -49.2 | AC_000020.1 | + | 17155 | 0.67 | 0.823 |
Target: 5'- aCAAAGCGcagcugcaagcgcuGCGaCCUcucAGUGGUCACAUCg -3' miRNA: 3'- -GUUUUGU--------------UGCgGGA---UCAUCGGUGUGG- -5' |
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750 | 5' | -49.2 | AC_000020.1 | + | 27477 | 0.67 | 0.815936 |
Target: 5'- gGAGGCAGC-CUCacGGUGGCCACuggACCu -3' miRNA: 3'- gUUUUGUUGcGGGa-UCAUCGGUG---UGG- -5' |
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750 | 5' | -49.2 | AC_000020.1 | + | 25599 | 0.68 | 0.773548 |
Target: 5'- ----uCAGCGCCCUcGUAGUUGCucuCCu -3' miRNA: 3'- guuuuGUUGCGGGAuCAUCGGUGu--GG- -5' |
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750 | 5' | -49.2 | AC_000020.1 | + | 14980 | 0.69 | 0.739882 |
Target: 5'- aGGAGCccguggcGCGUCCUGGcgAGgCACACCu -3' miRNA: 3'- gUUUUGu------UGCGGGAUCa-UCgGUGUGG- -5' |
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750 | 5' | -49.2 | AC_000020.1 | + | 15681 | 0.69 | 0.72838 |
Target: 5'- -cAGACAccAUGCUggGGUgcAGCCGCACCu -3' miRNA: 3'- guUUUGU--UGCGGgaUCA--UCGGUGUGG- -5' |
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750 | 5' | -49.2 | AC_000020.1 | + | 194 | 0.7 | 0.681379 |
Target: 5'- gCGGAACu-CGCCCUGucGUAaaaCCACGCCu -3' miRNA: 3'- -GUUUUGuuGCGGGAU--CAUc--GGUGUGG- -5' |
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750 | 5' | -49.2 | AC_000020.1 | + | 31130 | 0.7 | 0.681379 |
Target: 5'- gCGGAACu-CGCCCUGucGUAaaaCCACGCCu -3' miRNA: 3'- -GUUUUGuuGCGGGAU--CAUc--GGUGUGG- -5' |
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750 | 5' | -49.2 | AC_000020.1 | + | 7948 | 0.72 | 0.561809 |
Target: 5'- gCAAGuACAaggGCGCCgUAGUGGUCcagcGCGCCa -3' miRNA: 3'- -GUUU-UGU---UGCGGgAUCAUCGG----UGUGG- -5' |
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750 | 5' | -49.2 | AC_000020.1 | + | 27921 | 0.72 | 0.561809 |
Target: 5'- --cAGCcACGCCCa---AGCCACACCu -3' miRNA: 3'- guuUUGuUGCGGGaucaUCGGUGUGG- -5' |
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750 | 5' | -49.2 | AC_000020.1 | + | 27365 | 1.13 | 0.001021 |
Target: 5'- aCAAAACAACGCCCUAGUAGCCACACCu -3' miRNA: 3'- -GUUUUGUUGCGGGAUCAUCGGUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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