miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
750 5' -49.2 AC_000020.1 + 21031 0.66 0.888949
Target:  5'- aUAAGGC--UGCUCUGGcauccauguuGCCACACCa -3'
miRNA:   3'- -GUUUUGuuGCGGGAUCau--------CGGUGUGG- -5'
750 5' -49.2 AC_000020.1 + 14237 0.66 0.872394
Target:  5'- --cGGCGGCGCCCUuu--GCUGCcCCa -3'
miRNA:   3'- guuUUGUUGCGGGAucauCGGUGuGG- -5'
750 5' -49.2 AC_000020.1 + 14868 0.66 0.854654
Target:  5'- uGAGGCggUGCCCgaccucUGGCCgggaguaaACACCa -3'
miRNA:   3'- gUUUUGuuGCGGGauc---AUCGG--------UGUGG- -5'
750 5' -49.2 AC_000020.1 + 3352 0.67 0.845363
Target:  5'- aAAGugGACGCCCgcuuGcAGCCccgcGCAUCa -3'
miRNA:   3'- gUUUugUUGCGGGau--CaUCGG----UGUGG- -5'
750 5' -49.2 AC_000020.1 + 26617 0.67 0.845363
Target:  5'- ---uACGACGCCCccgGGUcuuCCACACa -3'
miRNA:   3'- guuuUGUUGCGGGa--UCAuc-GGUGUGg -5'
750 5' -49.2 AC_000020.1 + 27393 0.67 0.845363
Target:  5'- -cAGACAagcccGCGCCUacuuGUAGCgACACUg -3'
miRNA:   3'- guUUUGU-----UGCGGGau--CAUCGgUGUGG- -5'
750 5' -49.2 AC_000020.1 + 8937 0.67 0.835805
Target:  5'- aAAAGCAuaauuaGCGCCCUG--AGCCugcccagacccGCGCCc -3'
miRNA:   3'- gUUUUGU------UGCGGGAUcaUCGG-----------UGUGG- -5'
750 5' -49.2 AC_000020.1 + 17155 0.67 0.823
Target:  5'- aCAAAGCGcagcugcaagcgcuGCGaCCUcucAGUGGUCACAUCg -3'
miRNA:   3'- -GUUUUGU--------------UGCgGGA---UCAUCGGUGUGG- -5'
750 5' -49.2 AC_000020.1 + 27477 0.67 0.815936
Target:  5'- gGAGGCAGC-CUCacGGUGGCCACuggACCu -3'
miRNA:   3'- gUUUUGUUGcGGGa-UCAUCGGUG---UGG- -5'
750 5' -49.2 AC_000020.1 + 25599 0.68 0.773548
Target:  5'- ----uCAGCGCCCUcGUAGUUGCucuCCu -3'
miRNA:   3'- guuuuGUUGCGGGAuCAUCGGUGu--GG- -5'
750 5' -49.2 AC_000020.1 + 14980 0.69 0.739882
Target:  5'- aGGAGCccguggcGCGUCCUGGcgAGgCACACCu -3'
miRNA:   3'- gUUUUGu------UGCGGGAUCa-UCgGUGUGG- -5'
750 5' -49.2 AC_000020.1 + 15681 0.69 0.72838
Target:  5'- -cAGACAccAUGCUggGGUgcAGCCGCACCu -3'
miRNA:   3'- guUUUGU--UGCGGgaUCA--UCGGUGUGG- -5'
750 5' -49.2 AC_000020.1 + 194 0.7 0.681379
Target:  5'- gCGGAACu-CGCCCUGucGUAaaaCCACGCCu -3'
miRNA:   3'- -GUUUUGuuGCGGGAU--CAUc--GGUGUGG- -5'
750 5' -49.2 AC_000020.1 + 31130 0.7 0.681379
Target:  5'- gCGGAACu-CGCCCUGucGUAaaaCCACGCCu -3'
miRNA:   3'- -GUUUUGuuGCGGGAU--CAUc--GGUGUGG- -5'
750 5' -49.2 AC_000020.1 + 7948 0.72 0.561809
Target:  5'- gCAAGuACAaggGCGCCgUAGUGGUCcagcGCGCCa -3'
miRNA:   3'- -GUUU-UGU---UGCGGgAUCAUCGG----UGUGG- -5'
750 5' -49.2 AC_000020.1 + 27921 0.72 0.561809
Target:  5'- --cAGCcACGCCCa---AGCCACACCu -3'
miRNA:   3'- guuUUGuUGCGGGaucaUCGGUGUGG- -5'
750 5' -49.2 AC_000020.1 + 27365 1.13 0.001021
Target:  5'- aCAAAACAACGCCCUAGUAGCCACACCu -3'
miRNA:   3'- -GUUUUGUUGCGGGAUCAUCGGUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.