miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
752 5' -44.7 AC_000020.1 + 31237 1.1 0.004658
Target:  5'- cCUUGCAACACCCAAAUUUAAGCCACAc -3'
miRNA:   3'- -GAACGUUGUGGGUUUAAAUUCGGUGU- -5'
752 5' -44.7 AC_000020.1 + 27922 0.67 0.967452
Target:  5'- --aGCcACGCCCA------AGCCACAc -3'
miRNA:   3'- gaaCGuUGUGGGUuuaaauUCGGUGU- -5'
752 5' -44.7 AC_000020.1 + 27370 0.67 0.977516
Target:  5'- ---aCAACGCCCuAGU---AGCCACAc -3'
miRNA:   3'- gaacGUUGUGGGuUUAaauUCGGUGU- -5'
752 5' -44.7 AC_000020.1 + 25376 0.69 0.926134
Target:  5'- cCUUGCcuccuACACCUAGAagUGGGCUugGg -3'
miRNA:   3'- -GAACGu----UGUGGGUUUaaAUUCGGugU- -5'
752 5' -44.7 AC_000020.1 + 16922 0.66 0.980296
Target:  5'- --gGCAAC-CCCGucGAUgcu-GCCACAa -3'
miRNA:   3'- gaaCGUUGuGGGU--UUAaauuCGGUGU- -5'
752 5' -44.7 AC_000020.1 + 13589 0.72 0.83285
Target:  5'- --gGCAGgACCguAGUUaUAGGCCACAa -3'
miRNA:   3'- gaaCGUUgUGGguUUAA-AUUCGGUGU- -5'
752 5' -44.7 AC_000020.1 + 10003 0.71 0.862215
Target:  5'- gCUUGCGACACUUAAAguaUGAGUCGgGg -3'
miRNA:   3'- -GAACGUUGUGGGUUUaa-AUUCGGUgU- -5'
752 5' -44.7 AC_000020.1 + 7259 0.68 0.949577
Target:  5'- aUUGCAuCACuCCAGAaaaaaGAGCCAUAg -3'
miRNA:   3'- gAACGUuGUG-GGUUUaaa--UUCGGUGU- -5'
752 5' -44.7 AC_000020.1 + 6206 0.68 0.963481
Target:  5'- uCUUGCAACACuCCAAug-UAAGUgGg- -3'
miRNA:   3'- -GAACGUUGUG-GGUUuaaAUUCGgUgu -5'
752 5' -44.7 AC_000020.1 + 4614 0.69 0.926134
Target:  5'- uUUGCAACcuguCCCAGAggcuuUUUAAGUCAUc -3'
miRNA:   3'- gAACGUUGu---GGGUUU-----AAAUUCGGUGu -5'
752 5' -44.7 AC_000020.1 + 4359 0.7 0.896946
Target:  5'- aCUUGCcACACCCug---UGGGCC-CAu -3'
miRNA:   3'- -GAACGuUGUGGGuuuaaAUUCGGuGU- -5'
752 5' -44.7 AC_000020.1 + 87 1.1 0.004658
Target:  5'- cCUUGCAACACCCAAAUUUAAGCCACAc -3'
miRNA:   3'- -GAACGUUGUGGGUUUAAAUUCGGUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.