miRNA display CGI


Results 1 - 4 of 4 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7536 3' -48 NC_001946.1 + 4256 0.67 0.496574
Target:  5'- -aUUCCUCUUUCucuaaaguUAAUCUGCCa -3'
miRNA:   3'- uaAGGGAGAAAGuaau----GUUGGACGGg -5'
7536 3' -48 NC_001946.1 + 4471 0.67 0.45914
Target:  5'- --aUCUUCUUUCAUcaacgaGCAugCUGUCCu -3'
miRNA:   3'- uaaGGGAGAAAGUAa-----UGUugGACGGG- -5'
7536 3' -48 NC_001946.1 + 1879 0.69 0.346491
Target:  5'- uUUCCCUCUUauccUCAggaugcucugAUAGCCUGUCa -3'
miRNA:   3'- uAAGGGAGAA----AGUaa--------UGUUGGACGGg -5'
7536 3' -48 NC_001946.1 + 220 1.12 0.000217
Target:  5'- cAUUCCCUCUUUCAUUACAACCUGCCCg -3'
miRNA:   3'- -UAAGGGAGAAAGUAAUGUUGGACGGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.