miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
755 3' -58.1 NC_000852.3 + 142541 0.68 0.898357
Target:  5'- nCCCCAGUGUCGCGcaaAGAaCCuacaccaccaaCCGAg -3'
miRNA:   3'- uGGGGUCACAGCGCa--UCUaGG-----------GGCUg -5'
755 3' -58.1 NC_000852.3 + 144360 0.74 0.576232
Target:  5'- aACCCCAGUGUCGCGcaaAGAaccuacacccaagacUCCCacauCGGCa -3'
miRNA:   3'- -UGGGGUCACAGCGCa--UCU---------------AGGG----GCUG- -5'
755 3' -58.1 NC_000852.3 + 264700 0.76 0.454252
Target:  5'- uACCCCAGaUGUCGCGgucGUCCUCGAa -3'
miRNA:   3'- -UGGGGUC-ACAGCGCaucUAGGGGCUg -5'
755 3' -58.1 NC_000852.3 + 144384 0.83 0.192359
Target:  5'- aACCCCAucGUCGCGUAGAUCCCCa-- -3'
miRNA:   3'- -UGGGGUcaCAGCGCAUCUAGGGGcug -5'
755 3' -58.1 NC_000852.3 + 144432 0.84 0.171012
Target:  5'- aACCCCAGUGUCGCGUAaAUCCCCn-- -3'
miRNA:   3'- -UGGGGUCACAGCGCAUcUAGGGGcug -5'
755 3' -58.1 NC_000852.3 + 144408 0.89 0.086471
Target:  5'- aACCUCAGUGUUGCGUAGAUCCCCa-- -3'
miRNA:   3'- -UGGGGUCACAGCGCAUCUAGGGGcug -5'
755 3' -58.1 NC_000852.3 + 142566 1.08 0.005274
Target:  5'- aACCCCAGUGUCGCGUAGAUCCCCGACc -3'
miRNA:   3'- -UGGGGUCACAGCGCAUCUAGGGGCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.