miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
755 5' -50.4 NC_000852.3 + 2996 0.67 0.999454
Target:  5'- gGCGCAAGGGAuacUCUGCggACUACUAugCu -3'
miRNA:   3'- -CGCGUUUCUU---GGAUG--UGGUGGUugGc -5'
755 5' -50.4 NC_000852.3 + 16702 0.68 0.998808
Target:  5'- gGCGcCGucGAACUUAUAgauaaccuaaauCUACCAGCCGa -3'
miRNA:   3'- -CGC-GUuuCUUGGAUGU------------GGUGGUUGGC- -5'
755 5' -50.4 NC_000852.3 + 22084 0.67 0.999184
Target:  5'- cGCGCcca-AACCUGCACCcaaACCcgcACCGa -3'
miRNA:   3'- -CGCGuuucUUGGAUGUGG---UGGu--UGGC- -5'
755 5' -50.4 NC_000852.3 + 24269 0.7 0.994007
Target:  5'- uGCGcCAAAGccaguucccaAACCUGCACCGaagcCCAcGCCGa -3'
miRNA:   3'- -CGC-GUUUC----------UUGGAUGUGGU----GGU-UGGC- -5'
755 5' -50.4 NC_000852.3 + 41427 0.66 0.999889
Target:  5'- uGgGCAAGG-ACCauuacgggucaUGCAgCugCAACCGg -3'
miRNA:   3'- -CgCGUUUCuUGG-----------AUGUgGugGUUGGC- -5'
755 5' -50.4 NC_000852.3 + 81389 0.69 0.9976
Target:  5'- cGCGCugucgucuuGGAcgccCCUGCACCAaagUCAACCGc -3'
miRNA:   3'- -CGCGuu-------UCUu---GGAUGUGGU---GGUUGGC- -5'
755 5' -50.4 NC_000852.3 + 119895 0.69 0.997175
Target:  5'- cCGCGAc-GACCaGCGCgACCAGCCa -3'
miRNA:   3'- cGCGUUucUUGGaUGUGgUGGUUGGc -5'
755 5' -50.4 NC_000852.3 + 122528 0.69 0.997175
Target:  5'- uGCGCcua-AACCUGCACCgaaGCCugcACCGa -3'
miRNA:   3'- -CGCGuuucUUGGAUGUGG---UGGu--UGGC- -5'
755 5' -50.4 NC_000852.3 + 122563 0.68 0.998808
Target:  5'- cUGCAccGaAGCCUGCACCgaaGCCugcACCGa -3'
miRNA:   3'- cGCGUuuC-UUGGAUGUGG---UGGu--UGGC- -5'
755 5' -50.4 NC_000852.3 + 132148 0.68 0.998808
Target:  5'- -aGCAGAaacGCCUACACCAagaGACCa -3'
miRNA:   3'- cgCGUUUcu-UGGAUGUGGUgg-UUGGc -5'
755 5' -50.4 NC_000852.3 + 142430 0.69 0.9976
Target:  5'- -aGUAAGaAACUUACuCCACCAACUGa -3'
miRNA:   3'- cgCGUUUcUUGGAUGuGGUGGUUGGC- -5'
755 5' -50.4 NC_000852.3 + 142531 1.13 0.013226
Target:  5'- cGCGCAAAGAACCUACACCACCAACCGa -3'
miRNA:   3'- -CGCGUUUCUUGGAUGUGGUGGUUGGC- -5'
755 5' -50.4 NC_000852.3 + 142604 0.68 0.998408
Target:  5'- uGgGCAAAcGAACCgACGCCaucggaauauaaaucACCAACCc -3'
miRNA:   3'- -CgCGUUU-CUUGGaUGUGG---------------UGGUUGGc -5'
755 5' -50.4 NC_000852.3 + 144349 0.83 0.541447
Target:  5'- cGCGCAAAGAACCUACACCcaagacucccacaucGgCAACUGc -3'
miRNA:   3'- -CGCGUUUCUUGGAUGUGG---------------UgGUUGGC- -5'
755 5' -50.4 NC_000852.3 + 149600 0.66 0.999819
Target:  5'- uUGCAGAGAcuCCaAUACCAUCAACa- -3'
miRNA:   3'- cGCGUUUCUu-GGaUGUGGUGGUUGgc -5'
755 5' -50.4 NC_000852.3 + 158424 0.67 0.999442
Target:  5'- cGCGCcgaaacccguaccAAGGccuaAGCCUGCACCAa-AACCGa -3'
miRNA:   3'- -CGCG-------------UUUC----UUGGAUGUGGUggUUGGC- -5'
755 5' -50.4 NC_000852.3 + 189193 0.67 0.999557
Target:  5'- gGUGCAugAAGAaaacaguaauACCUACACCgaaACCcGCCc -3'
miRNA:   3'- -CGCGU--UUCU----------UGGAUGUGG---UGGuUGGc -5'
755 5' -50.4 NC_000852.3 + 192914 0.68 0.998292
Target:  5'- -aGCAcu-GGCaCUugACCACCAACCa -3'
miRNA:   3'- cgCGUuucUUG-GAugUGGUGGUUGGc -5'
755 5' -50.4 NC_000852.3 + 197246 0.67 0.999184
Target:  5'- cCGCuccGaAACCUGCGCCgacGCCAgcGCCGa -3'
miRNA:   3'- cGCGuuuC-UUGGAUGUGG---UGGU--UGGC- -5'
755 5' -50.4 NC_000852.3 + 197414 0.69 0.995509
Target:  5'- cCGCAccGaAACCUGCACCgaaACCugcACCGa -3'
miRNA:   3'- cGCGUuuC-UUGGAUGUGG---UGGu--UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.