miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
756	3'	-50	NC_000852.3	+	221005	0.66	0.999677
	Target:  5'- -----gGCgUCUGGCGAuguuauuCUGGGGGa -3' miRNA:   3'- aauuaaCG-AGACCGCUuau----GGUCCCC- -5'
756	3'	-50	NC_000852.3	+	286202	0.67	0.999596
	Target:  5'- ---uUUG-UCgaaGCGggUGCCGGGGGc -3' miRNA:   3'- aauuAACgAGac-CGCuuAUGGUCCCC- -5'
756	3'	-50	NC_000852.3	+	270285	0.67	0.999383
	Target:  5'- ------cUUUUGGUucGggUGCCAGGGGa -3' miRNA:   3'- aauuaacGAGACCG--CuuAUGGUCCCC- -5'
756	3'	-50	NC_000852.3	+	145878	0.68	0.998652
	Target:  5'- -----cGCUCUcGGau--UACCAGGGGa -3' miRNA:   3'- aauuaaCGAGA-CCgcuuAUGGUCCCC- -5'
756	3'	-50	NC_000852.3	+	37802	0.68	0.998069
	Target:  5'- -gGAggGCUCgGGgGAggGCuCGGGGGa -3' miRNA:   3'- aaUUaaCGAGaCCgCUuaUG-GUCCCC- -5'
756	3'	-50	NC_000852.3	+	37838	0.68	0.998069
	Target:  5'- -gGAggGCUCgGGgGAggGCuCGGGGGa -3' miRNA:   3'- aaUUaaCGAGaCCgCUuaUG-GUCCCC- -5'
756	3'	-50	NC_000852.3	+	100473	0.7	0.99114
	Target:  5'- ---cUUGUUgUGGCGuuuUACCGGGGa -3' miRNA:   3'- aauuAACGAgACCGCuu-AUGGUCCCc -5'
756	3'	-50	NC_000852.3	+	157680	1.1	0.017533
	Target:  5'- aUUAAUUGCUCUGGCGAAUACCAGGGGg -3' miRNA:   3'- -AAUUAACGAGACCGCUUAUGGUCCCC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home