miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7567 5' -54.3 NC_001962.1 + 98679 0.66 0.929579
Target:  5'- cCCGGCAcGCCggugaucgaUUgGGC-CGAACGCa -3'
miRNA:   3'- cGGCCGUuUGGg--------AAgCCGcGUUUGCG- -5'
7567 5' -54.3 NC_001962.1 + 11349 0.66 0.924164
Target:  5'- uGCCGGaCGAagaaAUCauuagUCGGCGCAcgccAACGUu -3'
miRNA:   3'- -CGGCC-GUU----UGGga---AGCCGCGU----UUGCG- -5'
7567 5' -54.3 NC_001962.1 + 63744 0.67 0.898726
Target:  5'- cGCCGGUuaacggguuGAGCCCgaUGGCGUuuuugucucuCGCa -3'
miRNA:   3'- -CGGCCG---------UUUGGGaaGCCGCGuuu-------GCG- -5'
7567 5' -54.3 NC_001962.1 + 82877 0.68 0.875033
Target:  5'- aGUCGuGCAAGCCCgcaaacaaaauucaaUguuUCGaGUGCAAAUGCa -3'
miRNA:   3'- -CGGC-CGUUUGGG---------------A---AGC-CGCGUUUGCG- -5'
7567 5' -54.3 NC_001962.1 + 109410 0.68 0.86451
Target:  5'- cGCUGGCAGAUUuggUUUUGGCGCuAugGg -3'
miRNA:   3'- -CGGCCGUUUGG---GAAGCCGCGuUugCg -5'
7567 5' -54.3 NC_001962.1 + 27169 0.68 0.851965
Target:  5'- aGCCGGacaAGgcugucuugcuguguGCCCgUCGcgcguaccggaGCGCGAACGCg -3'
miRNA:   3'- -CGGCCg--UU---------------UGGGaAGC-----------CGCGUUUGCG- -5'
7567 5' -54.3 NC_001962.1 + 61041 0.68 0.848745
Target:  5'- cGCCGGCGAAUCUaUUUGGUacaaCAAAUGUg -3'
miRNA:   3'- -CGGCCGUUUGGG-AAGCCGc---GUUUGCG- -5'
7567 5' -54.3 NC_001962.1 + 13814 0.69 0.823588
Target:  5'- gGCCuGCGcuAUCUUcuaUCGGCGUAAACGUg -3'
miRNA:   3'- -CGGcCGUu-UGGGA---AGCCGCGUUUGCG- -5'
7567 5' -54.3 NC_001962.1 + 83471 0.69 0.79681
Target:  5'- cGCUGGaCGAuACCC-UCGGCgGCGAuUGCg -3'
miRNA:   3'- -CGGCC-GUU-UGGGaAGCCG-CGUUuGCG- -5'
7567 5' -54.3 NC_001962.1 + 73452 0.7 0.758993
Target:  5'- cCCGGCGAACCgggUUCGG-GCAAGuCGUc -3'
miRNA:   3'- cGGCCGUUUGGg--AAGCCgCGUUU-GCG- -5'
7567 5' -54.3 NC_001962.1 + 44071 0.71 0.698974
Target:  5'- -aUGGCAAACCaugUC-GCGCGAGCGUc -3'
miRNA:   3'- cgGCCGUUUGGga-AGcCGCGUUUGCG- -5'
7567 5' -54.3 NC_001962.1 + 71407 0.75 0.503885
Target:  5'- cGUCGGCG--UCCgugUCGGCGCuAACGUa -3'
miRNA:   3'- -CGGCCGUuuGGGa--AGCCGCGuUUGCG- -5'
7567 5' -54.3 NC_001962.1 + 82034 1.15 0.001459
Target:  5'- cGCCGGCAAACCCUUCGGCGCAAACGCa -3'
miRNA:   3'- -CGGCCGUUUGGGAAGCCGCGUUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.