Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
7568 | 3' | -55.4 | NC_001962.1 | + | 56837 | 0.66 | 0.896594 |
Target: 5'- uUGCagaUACGAUuGCGCCGACGAGUa--- -3' miRNA: 3'- -ACG---GUGCUGcUGUGGCUGCUCAcagu -5' |
|||||||
7568 | 3' | -55.4 | NC_001962.1 | + | 87437 | 0.67 | 0.882981 |
Target: 5'- gGCgGCGGCGGCGgUGACG-GUGg-- -3' miRNA: 3'- aCGgUGCUGCUGUgGCUGCuCACagu -5' |
|||||||
7568 | 3' | -55.4 | NC_001962.1 | + | 6130 | 0.68 | 0.836072 |
Target: 5'- cGCCACGGCGuuuuuguuguuuuACACgGAagaGAacGUGUCAa -3' miRNA: 3'- aCGGUGCUGC-------------UGUGgCUg--CU--CACAGU- -5' |
|||||||
7568 | 3' | -55.4 | NC_001962.1 | + | 7067 | 0.7 | 0.726257 |
Target: 5'- gUGCCGCGccACGGCGCCuACc-GUGUCAa -3' miRNA: 3'- -ACGGUGC--UGCUGUGGcUGcuCACAGU- -5' |
|||||||
7568 | 3' | -55.4 | NC_001962.1 | + | 115417 | 0.71 | 0.675733 |
Target: 5'- -aCCACGGCGGCAauUUGcCGAGUGUCu -3' miRNA: 3'- acGGUGCUGCUGU--GGCuGCUCACAGu -5' |
|||||||
7568 | 3' | -55.4 | NC_001962.1 | + | 100885 | 1.09 | 0.003042 |
Target: 5'- gUGCCACGACGACACCGACGAGUGUCAg -3' miRNA: 3'- -ACGGUGCUGCUGUGGCUGCUCACAGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home