miRNA: 3'- -CCG---UUGGGg----UAAUUGCacUGGCACCU- -5'
miRNA: 3'- -CCG-----------UUGGGGUaa--UUGCACuGGC--ACCU- -5'
miRNA: 3'- -CCGUUGGGGUAAUUGCACUGGCACCU- -5'
Results 1 - 3 of 3 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 7568 | 5' | -51.7 | NC_001962.1 | + | 33648 | 0.67 | 0.963216 |
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Target: 5'- cGGUgccAGCCCaucgaGUUGACG--GCCGUGGGc -3' miRNA: 3'- -CCG---UUGGGg----UAAUUGCacUGGCACCU- -5' |
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| 7568 | 5' | -51.7 | NC_001962.1 | + | 98070 | 0.68 | 0.951672 |
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Target: 5'- gGGCcgccguacaaaAACCCCAaaagGGCGUGuCCGcuUGGAa -3' miRNA: 3'- -CCG-----------UUGGGGUaa--UUGCACuGGC--ACCU- -5' |
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| 7568 | 5' | -51.7 | NC_001962.1 | + | 100837 | 1.11 | 0.004822 |
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Target: 5'- gGGCAACCCCAUUAACGUGACCGUGGAc -3' miRNA: 3'- -CCGUUGGGGUAAUUGCACUGGCACCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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