miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7569 5' -56.3 NC_001962.1 + 30760 0.68 0.785224
Target:  5'- uUGUGCACGCCCGUC-UUGCaGUUuuuGAUa -3'
miRNA:   3'- -ACGCGUGCGGGCAGuAGUG-CAAc--CUG- -5'
7569 5' -56.3 NC_001962.1 + 126970 0.68 0.747039
Target:  5'- gUGCgGCACGCUgcugGUUAUCGaccaccCGUUGGACg -3'
miRNA:   3'- -ACG-CGUGCGGg---CAGUAGU------GCAACCUG- -5'
7569 5' -56.3 NC_001962.1 + 112949 0.69 0.697062
Target:  5'- gUGacaGCACGCaCCGUCGUCAUcg-GGAa -3'
miRNA:   3'- -ACg--CGUGCG-GGCAGUAGUGcaaCCUg -5'
7569 5' -56.3 NC_001962.1 + 103123 1.1 0.001801
Target:  5'- uUGCGCACGCCCGUCAUCACGUUGGACa -3'
miRNA:   3'- -ACGCGUGCGGGCAGUAGUGCAACCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.