miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7570 3' -44.2 NC_001962.1 + 106533 0.67 0.999985
Target:  5'- aAGAcgUCgUACUCGUAAAGuCCcGUgUCGu -3'
miRNA:   3'- -UCUuaAG-AUGAGCAUUUC-GGuCA-AGU- -5'
7570 3' -44.2 NC_001962.1 + 64903 0.67 0.999971
Target:  5'- uAGAAUUCUACUUGUAAcGCacgauuaAGUaugaaUCAu -3'
miRNA:   3'- -UCUUAAGAUGAGCAUUuCGg------UCA-----AGU- -5'
7570 3' -44.2 NC_001962.1 + 86518 0.68 0.999869
Target:  5'- uAGAAUUCUACUUGUAAAacaaauuGUCGGaugaugUCAu -3'
miRNA:   3'- -UCUUAAGAUGAGCAUUU-------CGGUCa-----AGU- -5'
7570 3' -44.2 NC_001962.1 + 107196 0.69 0.999832
Target:  5'- uAGAAUUCUGCcCGUAAAuCaAGUUCGa -3'
miRNA:   3'- -UCUUAAGAUGaGCAUUUcGgUCAAGU- -5'
7570 3' -44.2 NC_001962.1 + 107088 0.72 0.99646
Target:  5'- uAGAAUUCUACUCGUAAAacgaauUCGGUUa- -3'
miRNA:   3'- -UCUUAAGAUGAGCAUUUc-----GGUCAAgu -5'
7570 3' -44.2 NC_001962.1 + 122004 0.81 0.776311
Target:  5'- uGAucGUUCUACUCGU-AAGCaCAGUUCAa -3'
miRNA:   3'- uCU--UAAGAUGAGCAuUUCG-GUCAAGU- -5'
7570 3' -44.2 NC_001962.1 + 90110 0.84 0.644459
Target:  5'- -aAAUUCUACUCGUAAAGCgAGUUUg -3'
miRNA:   3'- ucUUAAGAUGAGCAUUUCGgUCAAGu -5'
7570 3' -44.2 NC_001962.1 + 107655 0.85 0.576562
Target:  5'- uAGAAUUUUACUCGUAAAGCgAGUUg- -3'
miRNA:   3'- -UCUUAAGAUGAGCAUUUCGgUCAAgu -5'
7570 3' -44.2 NC_001962.1 + 89615 0.87 0.510376
Target:  5'- uAGAAUUaUACUCGUAAAGCgAGUUCAa -3'
miRNA:   3'- -UCUUAAgAUGAGCAUUUCGgUCAAGU- -5'
7570 3' -44.2 NC_001962.1 + 22626 0.89 0.417815
Target:  5'- uGAAUUCUACUCGUAAAGCgAGUUa- -3'
miRNA:   3'- uCUUAAGAUGAGCAUUUCGgUCAAgu -5'
7570 3' -44.2 NC_001962.1 + 23423 0.95 0.20956
Target:  5'- uAGAAUUUUACUCGUAAAGCgAGUUCAg -3'
miRNA:   3'- -UCUUAAGAUGAGCAUUUCGgUCAAGU- -5'
7570 3' -44.2 NC_001962.1 + 23286 0.95 0.20956
Target:  5'- uAGAAUUUUACUCGUAAAGCgAGUUCAg -3'
miRNA:   3'- -UCUUAAGAUGAGCAUUUCGgUCAAGU- -5'
7570 3' -44.2 NC_001962.1 + 23174 0.96 0.187681
Target:  5'- uAGAAUUCUACUCGUAAAGCgAGUUUAa -3'
miRNA:   3'- -UCUUAAGAUGAGCAUUUCGgUCAAGU- -5'
7570 3' -44.2 NC_001962.1 + 22734 0.97 0.167838
Target:  5'- uAGAAUUaUACUCGUAAAGCCAGUUCAg -3'
miRNA:   3'- -UCUUAAgAUGAGCAUUUCGGUCAAGU- -5'
7570 3' -44.2 NC_001962.1 + 22914 0.97 0.167838
Target:  5'- uAGAAUUaUACUCGUAAAGCCAGUUCAg -3'
miRNA:   3'- -UCUUAAgAUGAGCAUUUCGGUCAAGU- -5'
7570 3' -44.2 NC_001962.1 + 107461 1 0.109221
Target:  5'- uAGAA-UCUACUCGUAAAGCCAGUUCAg -3'
miRNA:   3'- -UCUUaAGAUGAGCAUUUCGGUCAAGU- -5'
7570 3' -44.2 NC_001962.1 + 22806 1.01 0.100065
Target:  5'- uAGAAUUCUACUCGUAAAGCgAGUUCAg -3'
miRNA:   3'- -UCUUAAGAUGAGCAUUUCGgUCAAGU- -5'
7570 3' -44.2 NC_001962.1 + 22986 1.11 0.026761
Target:  5'- uAGAAUUCUACUCGUAAAGCCAGUUCAg -3'
miRNA:   3'- -UCUUAAGAUGAGCAUUUCGGUCAAGU- -5'
7570 3' -44.2 NC_001962.1 + 23085 1.11 0.026761
Target:  5'- uAGAAUUCUACUCGUAAAGCCAGUUCAg -3'
miRNA:   3'- -UCUUAAGAUGAGCAUUUCGGUCAAGU- -5'
7570 3' -44.2 NC_001962.1 + 106998 1.11 0.026761
Target:  5'- uAGAAUUCUACUCGUAAAGCCAGUUCAa -3'
miRNA:   3'- -UCUUAAGAUGAGCAUUUCGGUCAAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.