Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7570 | 5' | -40.2 | NC_001962.1 | + | 107216 | 1.03 | 0.145847 |
Target: 5'- uUUUGAUUGUGCUUUACAAGUAGAAUUc -3' miRNA: 3'- -AAACUAACACGAAAUGUUCAUCUUAA- -5' |
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7570 | 5' | -40.2 | NC_001962.1 | + | 89632 | 0.94 | 0.431403 |
Target: 5'- --cGAUUGUGUUUUACAAGUAGAAUUa -3' miRNA: 3'- aaaCUAACACGAAAUGUUCAUCUUAA- -5' |
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7570 | 5' | -40.2 | NC_001962.1 | + | 107107 | 0.93 | 0.474554 |
Target: 5'- cUUGAUUGUGCgUUACAAGUAGAAUUc -3' miRNA: 3'- aAACUAACACGaAAUGUUCAUCUUAA- -5' |
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7570 | 5' | -40.2 | NC_001962.1 | + | 23105 | 0.87 | 0.733287 |
Target: 5'- uUUUGAUUGUGUUUUACAcGUAGAAUUc -3' miRNA: 3'- -AAACUAACACGAAAUGUuCAUCUUAA- -5' |
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7570 | 5' | -40.2 | NC_001962.1 | + | 23006 | 0.87 | 0.733287 |
Target: 5'- uUUUGAUUGUGUUUUACAcGUAGAAUUc -3' miRNA: 3'- -AAACUAACACGAAAUGUuCAUCUUAA- -5' |
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7570 | 5' | -40.2 | NC_001962.1 | + | 107570 | 0.87 | 0.733287 |
Target: 5'- uUUUGAUUGUGUUUUACAcGUAGAAUUc -3' miRNA: 3'- -AAACUAACACGAAAUGUuCAUCUUAA- -5' |
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7570 | 5' | -40.2 | NC_001962.1 | + | 22825 | 0.87 | 0.756084 |
Target: 5'- cUUGAUUGUGUUUUACAcGUAGAAUUc -3' miRNA: 3'- aAACUAACACGAAAUGUuCAUCUUAA- -5' |
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7570 | 5' | -40.2 | NC_001962.1 | + | 22753 | 0.84 | 0.884523 |
Target: 5'- cUUGAUUaUGUUUUACAAGUAGAAUUa -3' miRNA: 3'- aAACUAAcACGAAAUGUUCAUCUUAA- -5' |
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7570 | 5' | -40.2 | NC_001962.1 | + | 22933 | 0.84 | 0.884523 |
Target: 5'- cUUGAUUaUGUUUUACAAGUAGAAUUa -3' miRNA: 3'- aAACUAAcACGAAAUGUUCAUCUUAA- -5' |
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7570 | 5' | -40.2 | NC_001962.1 | + | 107478 | 0.81 | 0.959092 |
Target: 5'- --cGAUUGUGUUUUACAcGUAGAAUc -3' miRNA: 3'- aaaCUAACACGAAAUGUuCAUCUUAa -5' |
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7570 | 5' | -40.2 | NC_001962.1 | + | 107016 | 0.8 | 0.963217 |
Target: 5'- -cUGAUcGUGCgUUACAAGUAGAAUUc -3' miRNA: 3'- aaACUAaCACGaAAUGUUCAUCUUAA- -5' |
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7570 | 5' | -40.2 | NC_001962.1 | + | 65401 | 0.77 | 0.99361 |
Target: 5'- aUUGAacugGCUUUACGAGUAGAAUUc -3' miRNA: 3'- aAACUaacaCGAAAUGUUCAUCUUAA- -5' |
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7570 | 5' | -40.2 | NC_001962.1 | + | 123766 | 0.74 | 0.999284 |
Target: 5'- -cUGAacugGCUUUACGAGUAGAAUUc -3' miRNA: 3'- aaACUaacaCGAAAUGUUCAUCUUAA- -5' |
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7570 | 5' | -40.2 | NC_001962.1 | + | 86609 | 0.74 | 0.999284 |
Target: 5'- -cUGAacugGCUUUACGAGUAGAAUUc -3' miRNA: 3'- aaACUaacaCGAAAUGUUCAUCUUAA- -5' |
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7570 | 5' | -40.2 | NC_001962.1 | + | 86536 | 0.74 | 0.999284 |
Target: 5'- -cUGAacugGCUUUACGAGUAGAAUUc -3' miRNA: 3'- aaACUaacaCGAAAUGUUCAUCUUAA- -5' |
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7570 | 5' | -40.2 | NC_001962.1 | + | 65328 | 0.74 | 0.999284 |
Target: 5'- -cUGAacugGCUUUACGAGUAGAAUUc -3' miRNA: 3'- aaACUaacaCGAAAUGUUCAUCUUAA- -5' |
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7570 | 5' | -40.2 | NC_001962.1 | + | 65120 | 0.74 | 0.999284 |
Target: 5'- -cUGAacugGCUUUACGAGUAGAAUUc -3' miRNA: 3'- aaACUaacaCGAAAUGUUCAUCUUAA- -5' |
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7570 | 5' | -40.2 | NC_001962.1 | + | 65048 | 0.74 | 0.999284 |
Target: 5'- -cUGAaccgGCUUUACGAGUAGAAUUc -3' miRNA: 3'- aaACUaacaCGAAAUGUUCAUCUUAA- -5' |
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7570 | 5' | -40.2 | NC_001962.1 | + | 29609 | 0.74 | 0.999284 |
Target: 5'- -cUGAacugGCUUUACGAGUAGAAUUc -3' miRNA: 3'- aaACUaacaCGAAAUGUUCAUCUUAA- -5' |
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7570 | 5' | -40.2 | NC_001962.1 | + | 123838 | 0.74 | 0.999284 |
Target: 5'- -cUGAacugGCUUUACGAGUAGAAUUc -3' miRNA: 3'- aaACUaacaCGAAAUGUUCAUCUUAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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