miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7570 5' -40.2 NC_001962.1 + 29609 0.74 0.999284
Target:  5'- -cUGAacugGCUUUACGAGUAGAAUUc -3'
miRNA:   3'- aaACUaacaCGAAAUGUUCAUCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 65401 0.77 0.99361
Target:  5'- aUUGAacugGCUUUACGAGUAGAAUUc -3'
miRNA:   3'- aAACUaacaCGAAAUGUUCAUCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 107016 0.8 0.963217
Target:  5'- -cUGAUcGUGCgUUACAAGUAGAAUUc -3'
miRNA:   3'- aaACUAaCACGaAAUGUUCAUCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 107478 0.81 0.959092
Target:  5'- --cGAUUGUGUUUUACAcGUAGAAUc -3'
miRNA:   3'- aaaCUAACACGAAAUGUuCAUCUUAa -5'
7570 5' -40.2 NC_001962.1 + 22933 0.84 0.884523
Target:  5'- cUUGAUUaUGUUUUACAAGUAGAAUUa -3'
miRNA:   3'- aAACUAAcACGAAAUGUUCAUCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 22753 0.84 0.884523
Target:  5'- cUUGAUUaUGUUUUACAAGUAGAAUUa -3'
miRNA:   3'- aAACUAAcACGAAAUGUUCAUCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 22825 0.87 0.756084
Target:  5'- cUUGAUUGUGUUUUACAcGUAGAAUUc -3'
miRNA:   3'- aAACUAACACGAAAUGUuCAUCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 23006 0.87 0.733287
Target:  5'- uUUUGAUUGUGUUUUACAcGUAGAAUUc -3'
miRNA:   3'- -AAACUAACACGAAAUGUuCAUCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 23105 0.87 0.733287
Target:  5'- uUUUGAUUGUGUUUUACAcGUAGAAUUc -3'
miRNA:   3'- -AAACUAACACGAAAUGUuCAUCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 107570 0.87 0.733287
Target:  5'- uUUUGAUUGUGUUUUACAcGUAGAAUUc -3'
miRNA:   3'- -AAACUAACACGAAAUGUuCAUCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 107107 0.93 0.474554
Target:  5'- cUUGAUUGUGCgUUACAAGUAGAAUUc -3'
miRNA:   3'- aAACUAACACGaAAUGUUCAUCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 89632 0.94 0.431403
Target:  5'- --cGAUUGUGUUUUACAAGUAGAAUUa -3'
miRNA:   3'- aaaCUAACACGAAAUGUUCAUCUUAA- -5'
7570 5' -40.2 NC_001962.1 + 107216 1.03 0.145847
Target:  5'- uUUUGAUUGUGCUUUACAAGUAGAAUUc -3'
miRNA:   3'- -AAACUAACACGAAAUGUUCAUCUUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.