miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7575 5' -56.1 NC_001962.1 + 93114 0.66 0.873575
Target:  5'- -cGGaUCGAAGCgcuguugauaucguCGAUACGGCCgugaGGCGCg -3'
miRNA:   3'- uaUC-GGUUUUG--------------GCUGUGCCGG----CCGCG- -5'
7575 5' -56.1 NC_001962.1 + 57262 0.66 0.85283
Target:  5'- ---aCCGAacaAACCGACGC-GCCGGCa- -3'
miRNA:   3'- uaucGGUU---UUGGCUGUGcCGGCCGcg -5'
7575 5' -56.1 NC_001962.1 + 2042 0.66 0.85283
Target:  5'- -cAGCCAG---CGGCGCcugcGCCGGUGCc -3'
miRNA:   3'- uaUCGGUUuugGCUGUGc---CGGCCGCG- -5'
7575 5' -56.1 NC_001962.1 + 21330 0.66 0.844758
Target:  5'- cUGGCCA--ACCG-CAUGGCgGacauuGCGCa -3'
miRNA:   3'- uAUCGGUuuUGGCuGUGCCGgC-----CGCG- -5'
7575 5' -56.1 NC_001962.1 + 78209 0.67 0.836488
Target:  5'- uUGGCCAGcugcGCCGuuuCGCGGC--GCGCg -3'
miRNA:   3'- uAUCGGUUu---UGGCu--GUGCCGgcCGCG- -5'
7575 5' -56.1 NC_001962.1 + 99317 0.68 0.754432
Target:  5'- -aAGCC---GCCGuuACaGCCGGCGUc -3'
miRNA:   3'- uaUCGGuuuUGGCugUGcCGGCCGCG- -5'
7575 5' -56.1 NC_001962.1 + 122467 0.68 0.754432
Target:  5'- uAUGGCguAGACCgGugGCGGC-GGCGa -3'
miRNA:   3'- -UAUCGguUUUGG-CugUGCCGgCCGCg -5'
7575 5' -56.1 NC_001962.1 + 98672 0.69 0.714665
Target:  5'- --cGCCGGuGAUCGAUugGGCCGaacgcaauuauGCGCu -3'
miRNA:   3'- uauCGGUU-UUGGCUGugCCGGC-----------CGCG- -5'
7575 5' -56.1 NC_001962.1 + 71389 0.69 0.704517
Target:  5'- --cGCUAAcguacaaCGACGCuguGGCCGGCGCc -3'
miRNA:   3'- uauCGGUUuug----GCUGUG---CCGGCCGCG- -5'
7575 5' -56.1 NC_001962.1 + 98383 0.69 0.704517
Target:  5'- uUGGUCAAAaucgcagacACCGACgGCGGUCaucuGGCGCc -3'
miRNA:   3'- uAUCGGUUU---------UGGCUG-UGCCGG----CCGCG- -5'
7575 5' -56.1 NC_001962.1 + 36407 0.7 0.673734
Target:  5'- --cGCUAGAcgacggacuuguGCUGuACAUGGCCGGUGUg -3'
miRNA:   3'- uauCGGUUU------------UGGC-UGUGCCGGCCGCG- -5'
7575 5' -56.1 NC_001962.1 + 61062 0.7 0.621844
Target:  5'- -gAGCaaaGAACCGACGCucgacGCCGGCGa -3'
miRNA:   3'- uaUCGgu-UUUGGCUGUGc----CGGCCGCg -5'
7575 5' -56.1 NC_001962.1 + 81425 0.7 0.621844
Target:  5'- -gAGCCAAcGCCGuCGC-GCCuGCGCa -3'
miRNA:   3'- uaUCGGUUuUGGCuGUGcCGGcCGCG- -5'
7575 5' -56.1 NC_001962.1 + 77206 0.72 0.549729
Target:  5'- -aGGCuCAAcGCCGACGCGGUgcacUGGgGCa -3'
miRNA:   3'- uaUCG-GUUuUGGCUGUGCCG----GCCgCG- -5'
7575 5' -56.1 NC_001962.1 + 8288 0.73 0.465138
Target:  5'- --cGUCAAacuguucacagaaccGACCGGCACGGCaagcuGGCGCu -3'
miRNA:   3'- uauCGGUU---------------UUGGCUGUGCCGg----CCGCG- -5'
7575 5' -56.1 NC_001962.1 + 60325 0.77 0.282694
Target:  5'- cAUGGCCGAGcuGgCGACGCGaGCCGGCaaGCa -3'
miRNA:   3'- -UAUCGGUUU--UgGCUGUGC-CGGCCG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.