miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7577 5' -60.4 NC_001962.1 + 15946 0.66 0.708458
Target:  5'- -gCGCCAACCGUGCUaaagGCCcagCCAgCGg -3'
miRNA:   3'- cgGCGGUUGGCGUGG----UGGa--GGUgGCa -5'
7577 5' -60.4 NC_001962.1 + 29814 0.66 0.68876
Target:  5'- gGUCGgCAaacgGCCGCAUaACCaggCCGCCGUg -3'
miRNA:   3'- -CGGCgGU----UGGCGUGgUGGa--GGUGGCA- -5'
7577 5' -60.4 NC_001962.1 + 70340 0.66 0.678838
Target:  5'- aCCuCCAccAUCGcCGCCGCCUUCACCa- -3'
miRNA:   3'- cGGcGGU--UGGC-GUGGUGGAGGUGGca -5'
7577 5' -60.4 NC_001962.1 + 1930 0.66 0.678838
Target:  5'- cGCCuCCAcCUcCACCACCaCCACCGc -3'
miRNA:   3'- -CGGcGGUuGGcGUGGUGGaGGUGGCa -5'
7577 5' -60.4 NC_001962.1 + 60109 0.66 0.678838
Target:  5'- uGCCG-CGGCCGCGCCuaacgucaCUCgGCCa- -3'
miRNA:   3'- -CGGCgGUUGGCGUGGug------GAGgUGGca -5'
7577 5' -60.4 NC_001962.1 + 2092 0.67 0.647885
Target:  5'- cGCCGCCAccACCccaaGCGCUGCCUCgAagcagacgaccuuCCGUu -3'
miRNA:   3'- -CGGCGGU--UGG----CGUGGUGGAGgU-------------GGCA- -5'
7577 5' -60.4 NC_001962.1 + 11603 0.67 0.637865
Target:  5'- gGCUGCCGuaaCGCAcCCGCCUuuuacaccuucuaCCACCa- -3'
miRNA:   3'- -CGGCGGUug-GCGU-GGUGGA-------------GGUGGca -5'
7577 5' -60.4 NC_001962.1 + 68606 0.67 0.637865
Target:  5'- cGCCGCgacaaaugagaguUAACCGCugCAUUuucgcgUCCAUCGUg -3'
miRNA:   3'- -CGGCG-------------GUUGGCGugGUGG------AGGUGGCA- -5'
7577 5' -60.4 NC_001962.1 + 78221 0.67 0.598811
Target:  5'- uCCGCCAugCGguugGCCAgCUgCGCCGUu -3'
miRNA:   3'- cGGCGGUugGCg---UGGUgGAgGUGGCA- -5'
7577 5' -60.4 NC_001962.1 + 119490 0.68 0.549312
Target:  5'- gGCCGgCGGCgGUuaucuuuuguuuACCGCCUCCACauuaGUa -3'
miRNA:   3'- -CGGCgGUUGgCG------------UGGUGGAGGUGg---CA- -5'
7577 5' -60.4 NC_001962.1 + 1974 0.69 0.510647
Target:  5'- aCCGgCGgcACCGcCACCACCUUCuuCCGUg -3'
miRNA:   3'- cGGCgGU--UGGC-GUGGUGGAGGu-GGCA- -5'
7577 5' -60.4 NC_001962.1 + 104775 0.7 0.473163
Target:  5'- uGCCGUuccccaacuCGACaCGCAUCugCUCCACgGUc -3'
miRNA:   3'- -CGGCG---------GUUG-GCGUGGugGAGGUGgCA- -5'
7577 5' -60.4 NC_001962.1 + 1610 0.72 0.361389
Target:  5'- aGCCGCCAuuaguagauuuGCCGgcugaaauguuacCACCGCCUgCACCa- -3'
miRNA:   3'- -CGGCGGU-----------UGGC-------------GUGGUGGAgGUGGca -5'
7577 5' -60.4 NC_001962.1 + 70391 0.74 0.262547
Target:  5'- aCCGCCAacaccaacaccuacACCuccacCACCACCUCCACCa- -3'
miRNA:   3'- cGGCGGU--------------UGGc----GUGGUGGAGGUGGca -5'
7577 5' -60.4 NC_001962.1 + 1698 0.75 0.235046
Target:  5'- aCCGCCGuCUGCAUCACCgccgCCACCa- -3'
miRNA:   3'- cGGCGGUuGGCGUGGUGGa---GGUGGca -5'
7577 5' -60.4 NC_001962.1 + 103431 0.84 0.058099
Target:  5'- cGCCGCCAccGCCGcCGCCGCCgCCGCCGc -3'
miRNA:   3'- -CGGCGGU--UGGC-GUGGUGGaGGUGGCa -5'
7577 5' -60.4 NC_001962.1 + 1667 0.85 0.052258
Target:  5'- cGCCGCCAGCCcCGCCugcGCCUCCACCa- -3'
miRNA:   3'- -CGGCGGUUGGcGUGG---UGGAGGUGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.