miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
759 3' -50 NC_000852.3 + 74534 0.66 0.999928
Target:  5'- --uGUACCAGAGGguGCCCauaauuuGGaUGCCa -3'
miRNA:   3'- cuuCAUGGUCUCU--UGGGgcu----UC-AUGG- -5'
759 3' -50 NC_000852.3 + 186469 0.66 0.999907
Target:  5'- aAAGUAUCGGaAGuucUUCCGAGGUGCUa -3'
miRNA:   3'- cUUCAUGGUC-UCuu-GGGGCUUCAUGG- -5'
759 3' -50 NC_000852.3 + 142553 0.66 0.999907
Target:  5'- --uGUACCAcGAGAACCCUc---UGCCu -3'
miRNA:   3'- cuuCAUGGU-CUCUUGGGGcuucAUGG- -5'
759 3' -50 NC_000852.3 + 58455 0.67 0.999807
Target:  5'- cGGAGUGUCGGAGGACUgCGGcGGaACCg -3'
miRNA:   3'- -CUUCAUGGUCUCUUGGgGCU-UCaUGG- -5'
759 3' -50 NC_000852.3 + 165274 0.67 0.999756
Target:  5'- aGAGGUcACCGGuucGACCCCGGuuGGUGUCg -3'
miRNA:   3'- -CUUCA-UGGUCuc-UUGGGGCU--UCAUGG- -5'
759 3' -50 NC_000852.3 + 178560 0.67 0.99962
Target:  5'- -cGGUACCAG-GGACCCU----UACCg -3'
miRNA:   3'- cuUCAUGGUCuCUUGGGGcuucAUGG- -5'
759 3' -50 NC_000852.3 + 147991 0.67 0.99962
Target:  5'- aGAAGUugUAGAGAAgCUgGAAG-AUCu -3'
miRNA:   3'- -CUUCAugGUCUCUUgGGgCUUCaUGG- -5'
759 3' -50 NC_000852.3 + 156742 0.67 0.99962
Target:  5'- ---aUACCGcGAGAAgCCCGAAGcugaACCu -3'
miRNA:   3'- cuucAUGGU-CUCUUgGGGCUUCa---UGG- -5'
759 3' -50 NC_000852.3 + 8776 0.67 0.999529
Target:  5'- --uGUAUCAaAGAACuCCUGAcGGUACCa -3'
miRNA:   3'- cuuCAUGGUcUCUUG-GGGCU-UCAUGG- -5'
759 3' -50 NC_000852.3 + 284964 0.68 0.999421
Target:  5'- cGAGG-ACCcGAGGA-CCCGAGGaACCc -3'
miRNA:   3'- -CUUCaUGGuCUCUUgGGGCUUCaUGG- -5'
759 3' -50 NC_000852.3 + 224388 0.68 0.998935
Target:  5'- --uGUACCAcGGGAAagUCCCGAauucauuuacaauAGUGCCc -3'
miRNA:   3'- cuuCAUGGU-CUCUU--GGGGCU-------------UCAUGG- -5'
759 3' -50 NC_000852.3 + 196602 0.69 0.998202
Target:  5'- aGGAGcGCagaAGAcGACUUCGAAGUACCa -3'
miRNA:   3'- -CUUCaUGg--UCUcUUGGGGCUUCAUGG- -5'
759 3' -50 NC_000852.3 + 88178 0.69 0.997479
Target:  5'- aGAAGUAuauUCGGAGcauGGCCUCGAAGUucuaACCc -3'
miRNA:   3'- -CUUCAU---GGUCUC---UUGGGGCUUCA----UGG- -5'
759 3' -50 NC_000852.3 + 283491 0.7 0.995953
Target:  5'- aGGAGUGCCGGAGAAUaugugacauccuUCCGGAugaucuUGCCa -3'
miRNA:   3'- -CUUCAUGGUCUCUUG------------GGGCUUc-----AUGG- -5'
759 3' -50 NC_000852.3 + 230793 0.7 0.995302
Target:  5'- ---aUACCGGAGAuGCCUCGuuGUAUCa -3'
miRNA:   3'- cuucAUGGUCUCU-UGGGGCuuCAUGG- -5'
759 3' -50 NC_000852.3 + 208619 0.7 0.993743
Target:  5'- aGAAGUACCAGAGAACCCn-------- -3'
miRNA:   3'- -CUUCAUGGUCUCUUGGGgcuucaugg -5'
759 3' -50 NC_000852.3 + 330028 0.71 0.989391
Target:  5'- ---uUGCCAGAGAACauauacaaCCGAAG-ACCu -3'
miRNA:   3'- cuucAUGGUCUCUUGg-------GGCUUCaUGG- -5'
759 3' -50 NC_000852.3 + 716 0.71 0.989391
Target:  5'- ---uUGCCAGAGAACauauacaaCCGAAG-ACCu -3'
miRNA:   3'- cuucAUGGUCUCUUGg-------GGCUUCaUGG- -5'
759 3' -50 NC_000852.3 + 255528 0.73 0.968388
Target:  5'- aGAGUACCAGAcgaugagugGGACCCUGcAAGUAUUc -3'
miRNA:   3'- cUUCAUGGUCU---------CUUGGGGC-UUCAUGG- -5'
759 3' -50 NC_000852.3 + 208457 1.12 0.015736
Target:  5'- cGAAGUACCAGAGAACCCCGAAGUACCc -3'
miRNA:   3'- -CUUCAUGGUCUCUUGGGGCUUCAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.