miRNA: 3'- gCaGCCgCGCACUGUAGAg------------CUGGACg -5'
miRNA: 3'- gCAGCCGCGcaCUGUAgaGCUGGaCG- -5'
miRNA: 3'- -GCAGCCGCGCACUGUAGAGCUGGACG- -5'
Results 1 - 3 of 3 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 7596 | 3' | -55.9 | NC_001963.1 | + | 2413 | 0.68 | 0.092979 |
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Target: 5'- gGcCGGgGCGUGGCAUCUgaggggcgcgcagGGCCUGg -3' miRNA: 3'- gCaGCCgCGCACUGUAGAg------------CUGGACg -5' |
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| 7596 | 3' | -55.9 | NC_001963.1 | + | 4956 | 0.68 | 0.085173 |
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Target: 5'- gGUCGGCGCcaGGCGUa-UGGCCgGCg -3' miRNA: 3'- gCAGCCGCGcaCUGUAgaGCUGGaCG- -5' |
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| 7596 | 3' | -55.9 | NC_001963.1 | + | 2811 | 1.13 | 0.000013 |
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Target: 5'- aCGUCGGCGCGUGACAUCUCGACCUGCa -3' miRNA: 3'- -GCAGCCGCGCACUGUAGAGCUGGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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