miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
760 3' -54.7 NC_000852.3 + 217108 0.66 0.994126
Target:  5'- aAGAcuGCaguCCGAGGUAcccCCGGAGAAagagucuccUCCCg -3'
miRNA:   3'- -UCU--UGg--GGCUUCAU---GGCCUCUU---------GGGG- -5'
760 3' -54.7 NC_000852.3 + 227242 0.66 0.993285
Target:  5'- uGGcAGCUUCGcGGGUGCUgGGAGAGgCCCg -3'
miRNA:   3'- -UC-UUGGGGC-UUCAUGG-CCUCUUgGGG- -5'
760 3' -54.7 NC_000852.3 + 257247 0.66 0.993285
Target:  5'- -uGACCCgGuuGAGUugcACCGGAaacAACCCCa -3'
miRNA:   3'- ucUUGGGgC--UUCA---UGGCCUc--UUGGGG- -5'
760 3' -54.7 NC_000852.3 + 142533 0.66 0.992152
Target:  5'- gAGGACCuuGuagucuggauuGUACCacGAGAACCCUc -3'
miRNA:   3'- -UCUUGGggCuu---------CAUGGc-CUCUUGGGG- -5'
760 3' -54.7 NC_000852.3 + 230804 0.66 0.991315
Target:  5'- aAGAACa-UGAuaUACCGGAGAugCCUc -3'
miRNA:   3'- -UCUUGggGCUucAUGGCCUCUugGGG- -5'
760 3' -54.7 NC_000852.3 + 265529 0.68 0.980656
Target:  5'- uGAACCCCGAuauAGaGCCcGAGAucguuuucuucGCCCa -3'
miRNA:   3'- uCUUGGGGCU---UCaUGGcCUCU-----------UGGGg -5'
760 3' -54.7 NC_000852.3 + 146597 0.68 0.976305
Target:  5'- uGAugUCCGaAAGUAcucCCGGAGAACUa- -3'
miRNA:   3'- uCUugGGGC-UUCAU---GGCCUCUUGGgg -5'
760 3' -54.7 NC_000852.3 + 151241 0.7 0.939146
Target:  5'- -aAGCCCCGAGGguuuugUCGG-GAAUCCCu -3'
miRNA:   3'- ucUUGGGGCUUCau----GGCCuCUUGGGG- -5'
760 3' -54.7 NC_000852.3 + 151467 0.71 0.902411
Target:  5'- aAGAACCCCGcacuGGggaCGGAGAACUUg -3'
miRNA:   3'- -UCUUGGGGCu---UCaugGCCUCUUGGGg -5'
760 3' -54.7 NC_000852.3 + 284971 0.72 0.869874
Target:  5'- gAGAA-CCCGAGG-ACCcGAGGACCCg -3'
miRNA:   3'- -UCUUgGGGCUUCaUGGcCUCUUGGGg -5'
760 3' -54.7 NC_000852.3 + 208626 0.75 0.72798
Target:  5'- -aAACUauaGAAGUACCaGAGAACCCCg -3'
miRNA:   3'- ucUUGGgg-CUUCAUGGcCUCUUGGGG- -5'
760 3' -54.7 NC_000852.3 + 171724 0.76 0.660192
Target:  5'- -cGGCCCCGAAGUcgcggcgACCGGAGGuuuCCaCCa -3'
miRNA:   3'- ucUUGGGGCUUCA-------UGGCCUCUu--GG-GG- -5'
760 3' -54.7 NC_000852.3 + 208447 0.87 0.208703
Target:  5'- gAGAACCCCGAAGUACCcGA-AACCCCu -3'
miRNA:   3'- -UCUUGGGGCUUCAUGGcCUcUUGGGG- -5'
760 3' -54.7 NC_000852.3 + 208483 1.13 0.005644
Target:  5'- gAGAACCCCGAAGUACCGGAGAACCCCg -3'
miRNA:   3'- -UCUUGGGGCUUCAUGGCCUCUUGGGG- -5'
760 3' -54.7 NC_000852.3 + 208519 1.13 0.005644
Target:  5'- gAGAACCCCGAAGUACCGGAGAACCCCg -3'
miRNA:   3'- -UCUUGGGGCUUCAUGGCCUCUUGGGG- -5'
760 3' -54.7 NC_000852.3 + 208555 1.13 0.005644
Target:  5'- gAGAACCCCGAAGUACCGGAGAACCCCg -3'
miRNA:   3'- -UCUUGGGGCUUCAUGGCCUCUUGGGG- -5'
760 3' -54.7 NC_000852.3 + 208591 1.13 0.005644
Target:  5'- gAGAACCCCGAAGUACCGGAGAACCCCg -3'
miRNA:   3'- -UCUUGGGGCUUCAUGGCCUCUUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.