miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7600 5' -54.1 NC_001963.1 + 1527 0.66 0.126308
Target:  5'- -gAGGGGUAccGCAagu-GGCGGCAGUu -3'
miRNA:   3'- gaUCUCCGUu-CGUaguuCCGCCGUCG- -5'
7600 5' -54.1 NC_001963.1 + 2781 0.68 0.10264
Target:  5'- -gGGAacGGCAGGCAgagaagagacaCAGcGGCaGGCAGCa -3'
miRNA:   3'- gaUCU--CCGUUCGUa----------GUU-CCG-CCGUCG- -5'
7600 5' -54.1 NC_001963.1 + 4129 0.69 0.072239
Target:  5'- -gGGAGGUGAGUuuGUCgAAGGCGG-GGCc -3'
miRNA:   3'- gaUCUCCGUUCG--UAG-UUCCGCCgUCG- -5'
7600 5' -54.1 NC_001963.1 + 2410 0.7 0.064945
Target:  5'- --cGGGGCGuGGCAUCugagGGGCGcGCAGg -3'
miRNA:   3'- gauCUCCGU-UCGUAGu---UCCGC-CGUCg -5'
7600 5' -54.1 NC_001963.1 + 4721 1.13 0.000014
Target:  5'- gCUAGAGGCAAGCAUCAAGGCGGCAGCg -3'
miRNA:   3'- -GAUCUCCGUUCGUAGUUCCGCCGUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.