miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7605 5' -65.7 NC_001963.1 + 2144 0.67 0.02133
Target:  5'- gGCCUCCgCUGcacGCGCCCgucuuuacggccgGGCCaCCGUa -3'
miRNA:   3'- -CGGGGGgGACau-CGUGGG-------------CCGG-GGCG- -5'
7605 5' -65.7 NC_001963.1 + 2347 0.67 0.019377
Target:  5'- -aCCCCgCaGUgccggugccacAGCACCaGGCCCUGCg -3'
miRNA:   3'- cgGGGGgGaCA-----------UCGUGGgCCGGGGCG- -5'
7605 5' -65.7 NC_001963.1 + 2384 0.67 0.018746
Target:  5'- cGCCCCUCagaUGccacGC-CCCGGCccgaaCCCGCa -3'
miRNA:   3'- -CGGGGGGg--ACau--CGuGGGCCG-----GGGCG- -5'
7605 5' -65.7 NC_001963.1 + 2525 1.1 0.000001
Target:  5'- uGCCCCCCCUGUAGCACCCGGCCCCGCc -3'
miRNA:   3'- -CGGGGGGGACAUCGUGGGCCGGGGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.