miRNA display CGI


Results 1 - 4 of 4 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7607 3' -56.7 NC_001963.1 + 3312 1.06 2.8e-05
Target:  5'- aCAAUCGACCUAGCCCACGAGGCGGAAu -3'
miRNA:   3'- -GUUAGCUGGAUCGGGUGCUCCGCCUU- -5'
7607 3' -56.7 NC_001963.1 + 1429 0.68 0.062694
Target:  5'- ---gCGACCgAGCCCACG-GGCGu-- -3'
miRNA:   3'- guuaGCUGGaUCGGGUGCuCCGCcuu -5'
7607 3' -56.7 NC_001963.1 + 635 0.66 0.094896
Target:  5'- --uUCGACCaa-CCCAgCGAGGCuGGAGu -3'
miRNA:   3'- guuAGCUGGaucGGGU-GCUCCG-CCUU- -5'
7607 3' -56.7 NC_001963.1 + 557 0.66 0.094896
Target:  5'- --cUCGGCCaAGgCCGCGgAGGaCGGAu -3'
miRNA:   3'- guuAGCUGGaUCgGGUGC-UCC-GCCUu -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.