miRNA: 3'- -GGa-GUUGUGUUCGUCaCCUcaUCCGc -5'
miRNA: 3'- ggAGUUGUgUU-CGUCa---CCUCaUCCGC- -5'
miRNA: 3'- -GGAGUUGUg-------------UUCGUCaCCUCAUCCGc -5'
miRNA: 3'- -GGAGUUGUGUUCGUCACCuCaUCCGC- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 7613 | 5' | -51.7 | NC_001964.1 | + | 1198 | 0.66 | 0.235523 |
|
Target: 5'- gCCacCGACGCGAGCGGcGGA--AGGCc -3' miRNA: 3'- -GGa-GUUGUGUUCGUCaCCUcaUCCGc -5' |
|||||||
| 7613 | 5' | -51.7 | NC_001964.1 | + | 2588 | 0.66 | 0.220806 |
|
Target: 5'- -gUCAACGgGAgGCGGaacgGGAGgGGGCGg -3' miRNA: 3'- ggAGUUGUgUU-CGUCa---CCUCaUCCGC- -5' |
|||||||
| 7613 | 5' | -51.7 | NC_001964.1 | + | 4947 | 0.68 | 0.171876 |
|
Target: 5'- aUCUCGGCAaccuccugcgggcgAGGCGGaGGAGUGGGUa -3' miRNA: 3'- -GGAGUUGUg-------------UUCGUCaCCUCAUCCGc -5' |
|||||||
| 7613 | 5' | -51.7 | NC_001964.1 | + | 976 | 0.96 | 0.000859 |
|
Target: 5'- gCCUCAACACAAGCAGUGGuGaAGGCGg -3' miRNA: 3'- -GGAGUUGUGUUCGUCACCuCaUCCGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home