miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7617 3' -53.9 NC_001964.1 + 2201 0.67 0.157401
Target:  5'- cGGUGCCG-GGcCGGCuucaucgCCGGUC-AUGGAg -3'
miRNA:   3'- -CCAUGGCaCU-GCCG-------GGUUAGcUACCU- -5'
7617 3' -53.9 NC_001964.1 + 1886 0.69 0.10943
Target:  5'- cGGUACCGUucguAgGGCCCuGGUCGccGGGg -3'
miRNA:   3'- -CCAUGGCAc---UgCCGGG-UUAGCuaCCU- -5'
7617 3' -53.9 NC_001964.1 + 2408 0.7 0.08924
Target:  5'- uGGUG-CGUGGuCGGCCCGAggggcggaccaCGGUGGGc -3'
miRNA:   3'- -CCAUgGCACU-GCCGGGUUa----------GCUACCU- -5'
7617 3' -53.9 NC_001964.1 + 2104 1.11 0.000031
Target:  5'- cGGUACCGUGACGGCCCAAUCGAUGGAc -3'
miRNA:   3'- -CCAUGGCACUGCCGGGUUAGCUACCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.