miRNA: 3'- uCGCA-CCACCGGGU---GUGGC---UGCu--CCC- -5'
miRNA: 3'- uCGCACCA-CCGGGU----------GUGgCugC-----------UCCC- -5'
miRNA: 3'- -UC-GCACCAC----CGGGUGugGCu----------GCUCCC- -5'
miRNA: 3'- -UCGCACCACCGGGUGUGGCUGCUCCC- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 7622 | 5' | -60.6 | NC_001964.1 | + | 1182 | 0.66 | 0.053552 |
|
Target: 5'- cGCGUcGGUGGCCCAgagUGCUGuuaGCGccuGGGu -3' miRNA: 3'- uCGCA-CCACCGGGU---GUGGC---UGCu--CCC- -5' |
|||||||
| 7622 | 5' | -60.6 | NC_001964.1 | + | 2405 | 0.67 | 0.050086 |
|
Target: 5'- uGCGUGGUcGGCCCGaggggcggacCACgGugGgcugguaccugAGGGg -3' miRNA: 3'- uCGCACCA-CCGGGU----------GUGgCugC-----------UCCC- -5' |
|||||||
| 7622 | 5' | -60.6 | NC_001964.1 | + | 1308 | 0.68 | 0.040948 |
|
Target: 5'- cAGcCGUGGUGacguGCCCGCugCGccagguacagcCGAGGGc -3' miRNA: 3'- -UC-GCACCAC----CGGGUGugGCu----------GCUCCC- -5' |
|||||||
| 7622 | 5' | -60.6 | NC_001964.1 | + | 1059 | 1.09 | 8e-06 |
|
Target: 5'- gAGCGUGGUGGCCCACACCGACGAGGGc -3' miRNA: 3'- -UCGCACCACCGGGUGUGGCUGCUCCC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home