miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
763 5' -50.7 NC_000852.3 + 122982 0.66 0.999715
Target:  5'- gCGCgGGCuuCGGUGCAGGcuUCGgCUc -3'
miRNA:   3'- -GCG-CCGuuGCUACGUCUuuAGCaGAa -5'
763 5' -50.7 NC_000852.3 + 255153 0.66 0.999715
Target:  5'- cCGCGGUAA-GAauacuUGCAGGGucccacucAUCGUCUg -3'
miRNA:   3'- -GCGCCGUUgCU-----ACGUCUU--------UAGCAGAa -5'
763 5' -50.7 NC_000852.3 + 246511 0.66 0.999643
Target:  5'- cCGCGGUAugGAUucucuaaagcaGCAGGcaGGUCGUa-- -3'
miRNA:   3'- -GCGCCGUugCUA-----------CGUCU--UUAGCAgaa -5'
763 5' -50.7 NC_000852.3 + 26759 0.66 0.999557
Target:  5'- uCGUuuucaGACgGAUGCAGAAAUCGUCa- -3'
miRNA:   3'- -GCGccg--UUG-CUACGUCUUUAGCAGaa -5'
763 5' -50.7 NC_000852.3 + 120324 0.66 0.999557
Target:  5'- aGCGGCAuuuuuUGCAGAAcuugacaauUCGUCUa -3'
miRNA:   3'- gCGCCGUugcu-ACGUCUUu--------AGCAGAa -5'
763 5' -50.7 NC_000852.3 + 175022 0.66 0.999453
Target:  5'- uCGuCGGUuucacCGGUGUAGAuAUCGUCa- -3'
miRNA:   3'- -GC-GCCGuu---GCUACGUCUuUAGCAGaa -5'
763 5' -50.7 NC_000852.3 + 308400 0.67 0.998797
Target:  5'- uCGCGGUuccGCGuagaGCAGGuGAUCGUCUc -3'
miRNA:   3'- -GCGCCGu--UGCua--CGUCU-UUAGCAGAa -5'
763 5' -50.7 NC_000852.3 + 103862 0.67 0.998554
Target:  5'- uCGUGGCAGC--UGCAGguAUCGUa-- -3'
miRNA:   3'- -GCGCCGUUGcuACGUCuuUAGCAgaa -5'
763 5' -50.7 NC_000852.3 + 81761 0.68 0.997563
Target:  5'- cCGCGGUugacuuUGGUGCAGggG-CGUCc- -3'
miRNA:   3'- -GCGCCGuu----GCUACGUCuuUaGCAGaa -5'
763 5' -50.7 NC_000852.3 + 264400 0.69 0.993876
Target:  5'- --aGGCGAUGAUGUGGAugcuaaagcgagAGUCGUCUc -3'
miRNA:   3'- gcgCCGUUGCUACGUCU------------UUAGCAGAa -5'
763 5' -50.7 NC_000852.3 + 45926 0.7 0.990804
Target:  5'- cCGCGGaugcuguCGuugGCGGAAAUCGUCa- -3'
miRNA:   3'- -GCGCCguu----GCua-CGUCUUUAGCAGaa -5'
763 5' -50.7 NC_000852.3 + 260550 1.06 0.028994
Target:  5'- cCGCGGCAACGAUGCAGAAAUCGUCUUu -3'
miRNA:   3'- -GCGCCGUUGCUACGUCUUUAGCAGAA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.