Results 41 - 60 of 80 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7633 | 3' | -61.6 | NC_001973.1 | + | 2678 | 0.74 | 0.247324 |
Target: 5'- gAGCUCGAGCUCGGCcGaCGCGUAa-- -3' miRNA: 3'- -UCGAGCUCGAGCCGcCcGCGCAUccu -5' |
|||||||
7633 | 3' | -61.6 | NC_001973.1 | + | 7443 | 0.74 | 0.253097 |
Target: 5'- cGCacgUGAGCUCGGCGgugcGGCGCGacgAGGAc -3' miRNA: 3'- uCGa--GCUCGAGCCGC----CCGCGCa--UCCU- -5' |
|||||||
7633 | 3' | -61.6 | NC_001973.1 | + | 12423 | 0.76 | 0.20017 |
Target: 5'- -aCUUGAGCUCGGCuGaCGCGUAGGAu -3' miRNA: 3'- ucGAGCUCGAGCCGcCcGCGCAUCCU- -5' |
|||||||
7633 | 3' | -61.6 | NC_001973.1 | + | 128979 | 0.76 | 0.181844 |
Target: 5'- -aCUCGAGCUCGGCcaaCGCGUAGGAu -3' miRNA: 3'- ucGAGCUCGAGCCGcccGCGCAUCCU- -5' |
|||||||
7633 | 3' | -61.6 | NC_001973.1 | + | 150952 | 0.78 | 0.142398 |
Target: 5'- cAGaCUCGAGCUCGGCGGaCGCGUAa-- -3' miRNA: 3'- -UC-GAGCUCGAGCCGCCcGCGCAUccu -5' |
|||||||
7633 | 3' | -61.6 | NC_001973.1 | + | 31039 | 0.78 | 0.144526 |
Target: 5'- uGCUCGAGCgucugaacgccgaCGGCGGGCaGCGUGcGGAu -3' miRNA: 3'- uCGAGCUCGa------------GCCGCCCG-CGCAU-CCU- -5' |
|||||||
7633 | 3' | -61.6 | NC_001973.1 | + | 71937 | 0.78 | 0.145961 |
Target: 5'- -aCUCGAGCUCGGCGGaCGCGUAaGAu -3' miRNA: 3'- ucGAGCUCGAGCCGCCcGCGCAUcCU- -5' |
|||||||
7633 | 3' | -61.6 | NC_001973.1 | + | 72024 | 0.78 | 0.145961 |
Target: 5'- -aCUCGAGCUCGGCGGaCGCGUAaGAu -3' miRNA: 3'- ucGAGCUCGAGCCGCCcGCGCAUcCU- -5' |
|||||||
7633 | 3' | -61.6 | NC_001973.1 | + | 72284 | 0.78 | 0.145961 |
Target: 5'- -aCUCGAGCUCGGCGGaCGCGUAaGAu -3' miRNA: 3'- ucGAGCUCGAGCCGCCcGCGCAUcCU- -5' |
|||||||
7633 | 3' | -61.6 | NC_001973.1 | + | 127432 | 0.78 | 0.145961 |
Target: 5'- -aCUCGAGCUCGGCGGaCGCGUAaGAu -3' miRNA: 3'- ucGAGCUCGAGCCGCCcGCGCAUcCU- -5' |
|||||||
7633 | 3' | -61.6 | NC_001973.1 | + | 129224 | 0.78 | 0.145961 |
Target: 5'- -aCUCGAGCUCGGCGGaCGCGUAaGAu -3' miRNA: 3'- ucGAGCUCGAGCCGCCcGCGCAUcCU- -5' |
|||||||
7633 | 3' | -61.6 | NC_001973.1 | + | 130950 | 0.78 | 0.145961 |
Target: 5'- -aCUCGAGCUCGGCGGaCGCGUAaGAu -3' miRNA: 3'- ucGAGCUCGAGCCGCCcGCGCAUcCU- -5' |
|||||||
7633 | 3' | -61.6 | NC_001973.1 | + | 160619 | 0.78 | 0.145961 |
Target: 5'- -aCUCGAGCUCGGCGGaCGCGUAaGAu -3' miRNA: 3'- ucGAGCUCGAGCCGCCcGCGCAUcCU- -5' |
|||||||
7633 | 3' | -61.6 | NC_001973.1 | + | 127586 | 0.79 | 0.125754 |
Target: 5'- aAGCUCGAGCUCGGCGGuCGCcUAGa- -3' miRNA: 3'- -UCGAGCUCGAGCCGCCcGCGcAUCcu -5' |
|||||||
7633 | 3' | -61.6 | NC_001973.1 | + | 132555 | 0.79 | 0.11665 |
Target: 5'- gGGCUCGAGCgcggCGGUGuGGCGCGccguguauuuUAGGAa -3' miRNA: 3'- -UCGAGCUCGa---GCCGC-CCGCGC----------AUCCU- -5' |
|||||||
7633 | 3' | -61.6 | NC_001973.1 | + | 20950 | 0.8 | 0.102833 |
Target: 5'- cGGCgcgguaaacUGAGCUCGGCGGaCGCGUAGGAu -3' miRNA: 3'- -UCGa--------GCUCGAGCCGCCcGCGCAUCCU- -5' |
|||||||
7633 | 3' | -61.6 | NC_001973.1 | + | 12190 | 0.8 | 0.113755 |
Target: 5'- ---cUGAGCUCGGCGGaCGCGUAGGAu -3' miRNA: 3'- ucgaGCUCGAGCCGCCcGCGCAUCCU- -5' |
|||||||
7633 | 3' | -61.6 | NC_001973.1 | + | 160464 | 0.8 | 0.113755 |
Target: 5'- ---cUGAGCUCGGCGGaCGCGUAGGAu -3' miRNA: 3'- ucgaGCUCGAGCCGCCcGCGCAUCCU- -5' |
|||||||
7633 | 3' | -61.6 | NC_001973.1 | + | 130618 | 0.82 | 0.077681 |
Target: 5'- ---cCGAGCUCGGCGGaCGCGUAGGAu -3' miRNA: 3'- ucgaGCUCGAGCCGCCcGCGCAUCCU- -5' |
|||||||
7633 | 3' | -61.6 | NC_001973.1 | + | 129147 | 0.82 | 0.073789 |
Target: 5'- ---aCGAGCUCGGCGGaCGCGUAGGAu -3' miRNA: 3'- ucgaGCUCGAGCCGCCcGCGCAUCCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home