Results 61 - 80 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7633 | 3' | -61.6 | NC_001973.1 | + | 2799 | 0.82 | 0.077681 |
Target: 5'- --aUUGAGCUCGGCGGaCGCGUAGGAu -3' miRNA: 3'- ucgAGCUCGAGCCGCCcGCGCAUCCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 96040 | 0.83 | 0.063206 |
Target: 5'- gAGCUCGGGCUgGGCGGucuguuCGCGUGGGAg -3' miRNA: 3'- -UCGAGCUCGAgCCGCCc-----GCGCAUCCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 16435 | 0.84 | 0.052708 |
Target: 5'- cGCUCGAGCUCGGCGGaCGCGUAaGAu -3' miRNA: 3'- uCGAGCUCGAGCCGCCcGCGCAUcCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 16513 | 0.84 | 0.052708 |
Target: 5'- cGCUCGAGCUCGGCGGaCGCGUAaGAu -3' miRNA: 3'- uCGAGCUCGAGCCGCCcGCGCAUcCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 151346 | 0.86 | 0.038525 |
Target: 5'- cAGaUUCGAGCUCGGCGGaCGCGUAGGAu -3' miRNA: 3'- -UC-GAGCUCGAGCCGCCcGCGCAUCCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 160382 | 0.86 | 0.041674 |
Target: 5'- aAGCUCGAGCUCGGCGGaCGCGUAaGAu -3' miRNA: 3'- -UCGAGCUCGAGCCGCCcGCGCAUcCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 12110 | 0.88 | 0.02737 |
Target: 5'- -aCUCGAGCUCGGCGGaCGCGUAGGAu -3' miRNA: 3'- ucGAGCUCGAGCCGCCcGCGCAUCCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 12345 | 0.88 | 0.02737 |
Target: 5'- -aCUCGAGCUCGGCGGaCGCGUAGGAu -3' miRNA: 3'- ucGAGCUCGAGCCGCCcGCGCAUCCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 16358 | 0.88 | 0.02737 |
Target: 5'- -aCUCGAGCUCGGCGGaCGCGUAGGAu -3' miRNA: 3'- ucGAGCUCGAGCCGCCcGCGCAUCCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 72119 | 0.88 | 0.02737 |
Target: 5'- -aCUCGAGCUCGGCGGaCGCGUAGGAu -3' miRNA: 3'- ucGAGCUCGAGCCGCCcGCGCAUCCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 129301 | 0.88 | 0.02737 |
Target: 5'- -aCUCGAGCUCGGCGGaCGCGUAGGAu -3' miRNA: 3'- ucGAGCUCGAGCCGCCcGCGCAUCCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 130695 | 0.88 | 0.02737 |
Target: 5'- -aCUCGAGCUCGGCGGaCGCGUAGGAu -3' miRNA: 3'- ucGAGCUCGAGCCGCCcGCGCAUCCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 130871 | 0.88 | 0.02737 |
Target: 5'- -aCUCGAGCUCGGCGGaCGCGUAGGAu -3' miRNA: 3'- ucGAGCUCGAGCCGCCcGCGCAUCCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 160697 | 0.88 | 0.02737 |
Target: 5'- -aCUCGAGCUCGGCGGaCGCGUAGGAu -3' miRNA: 3'- ucGAGCUCGAGCCGCCcGCGCAUCCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 151061 | 0.9 | 0.020468 |
Target: 5'- cAGaCUCGAGCUCGGCGGaCGCGUAGGAu -3' miRNA: 3'- -UC-GAGCUCGAGCCGCCcGCGCAUCCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 127512 | 0.91 | 0.018411 |
Target: 5'- ---cUGAGCUCGGCGGGCGCGUAGGAu -3' miRNA: 3'- ucgaGCUCGAGCCGCCCGCGCAUCCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 21156 | 0.95 | 0.009479 |
Target: 5'- cGCUCGAGCUCGGCGGaCGCGUAGGAu -3' miRNA: 3'- uCGAGCUCGAGCCGCCcGCGCAUCCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 130773 | 1 | 0.004261 |
Target: 5'- -aCUCGAGCUCGGCGGGCGCGUAGGAu -3' miRNA: 3'- ucGAGCUCGAGCCGCCCGCGCAUCCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 160794 | 1.08 | 0.001151 |
Target: 5'- aAGCUCGAGCUCGGCGGGCGCGUAGGAu -3' miRNA: 3'- -UCGAGCUCGAGCCGCCCGCGCAUCCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 21057 | 1.08 | 0.001121 |
Target: 5'- gAGCUCGAGCUCGGCGGGCGCGUAGGAu -3' miRNA: 3'- -UCGAGCUCGAGCCGCCCGCGCAUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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