Results 61 - 80 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7633 | 3' | -61.6 | NC_001973.1 | + | 7260 | 0.68 | 0.563026 |
Target: 5'- uGCgcagCGGGCUCGGCGcgcGGCGCGc---- -3' miRNA: 3'- uCGa---GCUCGAGCCGC---CCGCGCauccu -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 44447 | 0.71 | 0.400484 |
Target: 5'- cGCUCGGGC---GCGGGCGCucgGGGAu -3' miRNA: 3'- uCGAGCUCGagcCGCCCGCGca-UCCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 130540 | 0.71 | 0.368552 |
Target: 5'- ---cCGAGCUCGGCGGaCGCGUAaGAu -3' miRNA: 3'- ucgaGCUCGAGCCGCCcGCGCAUcCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 55905 | 0.72 | 0.353254 |
Target: 5'- gGGCUCGGGCUCGGgcuCGGGCuCGggcucGGGc -3' miRNA: 3'- -UCGAGCUCGAGCC---GCCCGcGCau---CCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 72200 | 0.72 | 0.345775 |
Target: 5'- uGCUgaaguUGAGCUCGGCGGaCGCGUAaGAu -3' miRNA: 3'- uCGA-----GCUCGAGCCGCCcGCGCAUcCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 96880 | 0.72 | 0.33841 |
Target: 5'- uGGCcgCGGaucuguGCgCGGCGGGCGCGUcGGAu -3' miRNA: 3'- -UCGa-GCU------CGaGCCGCCCGCGCAuCCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 12270 | 0.73 | 0.317005 |
Target: 5'- -----cAGCUCGGCGGaCGCGUAGGAu -3' miRNA: 3'- ucgagcUCGAGCCGCCcGCGCAUCCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 56510 | 0.73 | 0.317005 |
Target: 5'- gGGCggggCGGGCUCGGCgccaagcucGGGCGgGgcGGGc -3' miRNA: 3'- -UCGa---GCUCGAGCCG---------CCCGCgCauCCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 56456 | 0.73 | 0.317005 |
Target: 5'- gGGCggggCGGGCUCGGCgccaagcucGGGCGgGgcGGGc -3' miRNA: 3'- -UCGa---GCUCGAGCCG---------CCCGCgCauCCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 83950 | 0.71 | 0.408739 |
Target: 5'- cGCUCG-Ga--GGCGGGCGCGUcgAGGc -3' miRNA: 3'- uCGAGCuCgagCCGCCCGCGCA--UCCu -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 77014 | 0.7 | 0.425561 |
Target: 5'- --gUCGGGCggCGGCGGcGCGCGcaAGGAc -3' miRNA: 3'- ucgAGCUCGa-GCCGCC-CGCGCa-UCCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 83859 | 0.68 | 0.534233 |
Target: 5'- cGCgagCGAGCUCGcccgcGCGcGGCGCGagcucaGGGAg -3' miRNA: 3'- uCGa--GCUCGAGC-----CGC-CCGCGCa-----UCCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 160542 | 0.69 | 0.496702 |
Target: 5'- ---cUGAGCUCGGCGGaCGCGUAaGAu -3' miRNA: 3'- ucgaGCUCGAGCCGCCcGCGCAUcCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 127356 | 0.69 | 0.496702 |
Target: 5'- ---cUGAGCUCGGCGGaCGCGUAaGAu -3' miRNA: 3'- ucgaGCUCGAGCCGCCcGCGCAUcCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 95759 | 0.69 | 0.496702 |
Target: 5'- aAGaUCGuGCUCGGCguggccauguacGGGCGCGgcuGGAc -3' miRNA: 3'- -UCgAGCuCGAGCCG------------CCCGCGCau-CCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 89101 | 0.69 | 0.496702 |
Target: 5'- cGUcgUCGAGCUCcGCGGGCGCGc---- -3' miRNA: 3'- uCG--AGCUCGAGcCGCCCGCGCauccu -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 52726 | 0.69 | 0.487502 |
Target: 5'- cAGCUCGAGCgccaGGC-GGCGCGUc--- -3' miRNA: 3'- -UCGAGCUCGag--CCGcCCGCGCAuccu -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 136437 | 0.69 | 0.46935 |
Target: 5'- uGCgCGAGCgCaG-GGGCGCGUAGGGc -3' miRNA: 3'- uCGaGCUCGaGcCgCCCGCGCAUCCU- -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 72462 | 0.7 | 0.45155 |
Target: 5'- uGCcuaacCGAGCUCGGCGGaCGCGUAa-- -3' miRNA: 3'- uCGa----GCUCGAGCCGCCcGCGCAUccu -5' |
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7633 | 3' | -61.6 | NC_001973.1 | + | 24124 | 0.66 | 0.699929 |
Target: 5'- gAGCcgggCGAGCUC-GCGGGUGCGc---- -3' miRNA: 3'- -UCGa---GCUCGAGcCGCCCGCGCauccu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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