miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7633 5' -55.1 NC_001973.1 + 160831 1.1 0.003735
Target:  5'- cGGCCGGAGUCGAUCAUCGAGGUCGAGc -3'
miRNA:   3'- -CCGGCCUCAGCUAGUAGCUCCAGCUC- -5'
7633 5' -55.1 NC_001973.1 + 130808 0.8 0.319312
Target:  5'- cGGCCGGGGUCGAUCGaguUCGAGccCGAu -3'
miRNA:   3'- -CCGGCCUCAGCUAGU---AGCUCcaGCUc -5'
7633 5' -55.1 NC_001973.1 + 109298 0.77 0.422661
Target:  5'- --aCGGAG-CGcgCGUCGGGGUCGAGg -3'
miRNA:   3'- ccgGCCUCaGCuaGUAGCUCCAGCUC- -5'
7633 5' -55.1 NC_001973.1 + 124808 0.77 0.449214
Target:  5'- gGGCCGGGGccUCGAUCGgac-GGUCGAGg -3'
miRNA:   3'- -CCGGCCUC--AGCUAGUagcuCCAGCUC- -5'
7633 5' -55.1 NC_001973.1 + 84128 0.74 0.583309
Target:  5'- cGGCCGaucucagaaaucGAGUCGcgCAacUCGAGGcCGAGg -3'
miRNA:   3'- -CCGGC------------CUCAGCuaGU--AGCUCCaGCUC- -5'
7633 5' -55.1 NC_001973.1 + 160497 0.74 0.583309
Target:  5'- cGGCCaGGGUCGA---UgGAGGUCGAGc -3'
miRNA:   3'- -CCGGcCUCAGCUaguAgCUCCAGCUC- -5'
7633 5' -55.1 NC_001973.1 + 90290 0.71 0.777366
Target:  5'- cGGCCGGuguucaaggcgcacAGUCGGUCGgcgggCGAGG-CGGu -3'
miRNA:   3'- -CCGGCC--------------UCAGCUAGUa----GCUCCaGCUc -5'
7633 5' -55.1 NC_001973.1 + 67853 0.7 0.798101
Target:  5'- cGCuCGGAGaCGGUCGUUGAGcgaGUUGAGg -3'
miRNA:   3'- cCG-GCCUCaGCUAGUAGCUC---CAGCUC- -5'
7633 5' -55.1 NC_001973.1 + 2715 0.7 0.832271
Target:  5'- cGGCCGGGGUCGAUC----GGGUucaagcccgaUGAGa -3'
miRNA:   3'- -CCGGCCUCAGCUAGuagcUCCA----------GCUC- -5'
7633 5' -55.1 NC_001973.1 + 2833 0.7 0.832271
Target:  5'- cGGCCGGGGUCGAUC----GGGUucaagcccgaUGAGa -3'
miRNA:   3'- -CCGGCCUCAGCUAGuagcUCCA----------GCUC- -5'
7633 5' -55.1 NC_001973.1 + 12458 0.69 0.848325
Target:  5'- cGGCCGGGGUCGA---UCGAGuUCa-- -3'
miRNA:   3'- -CCGGCCUCAGCUaguAGCUCcAGcuc -5'
7633 5' -55.1 NC_001973.1 + 130573 0.69 0.848325
Target:  5'- cGGCCGGGGUCGA---UCGAGuUCa-- -3'
miRNA:   3'- -CCGGCCUCAGCUaguAGCUCcAGcuc -5'
7633 5' -55.1 NC_001973.1 + 21192 0.69 0.85607
Target:  5'- cGGCCGGGGUCGAUCGgguUCaAGccCGAu -3'
miRNA:   3'- -CCGGCCUCAGCUAGU---AGcUCcaGCUc -5'
7633 5' -55.1 NC_001973.1 + 151384 0.69 0.85607
Target:  5'- cGGCCGGGGUCG-UC--UGAGGUUa-- -3'
miRNA:   3'- -CCGGCCUCAGCuAGuaGCUCCAGcuc -5'
7633 5' -55.1 NC_001973.1 + 12146 0.69 0.870965
Target:  5'- uGCCGGGGUCa---AUCGAGuUCGAGc -3'
miRNA:   3'- cCGGCCUCAGcuagUAGCUCcAGCUC- -5'
7633 5' -55.1 NC_001973.1 + 57213 0.68 0.885028
Target:  5'- gGGCCGucGaCGA-CGUCGAGGUCGc- -3'
miRNA:   3'- -CCGGCcuCaGCUaGUAGCUCCAGCuc -5'
7633 5' -55.1 NC_001973.1 + 150933 0.68 0.910519
Target:  5'- cGCCGGGGUCGu---UgGAGGUCa-- -3'
miRNA:   3'- cCGGCCUCAGCuaguAgCUCCAGcuc -5'
7633 5' -55.1 NC_001973.1 + 135909 0.67 0.916325
Target:  5'- gGGCCGGA--CGAUCGUCGcAGaG-CGGGc -3'
miRNA:   3'- -CCGGCCUcaGCUAGUAGC-UC-CaGCUC- -5'
7633 5' -55.1 NC_001973.1 + 85317 0.67 0.927242
Target:  5'- uGuuGGAG-CGGcUCAcguUCGAGGUCGGc -3'
miRNA:   3'- cCggCCUCaGCU-AGU---AGCUCCAGCUc -5'
7633 5' -55.1 NC_001973.1 + 7041 0.67 0.927242
Target:  5'- aGCUGGAcgaGUCGGUCGUgaaCGAgcugcgcgcccuGGUCGAGc -3'
miRNA:   3'- cCGGCCU---CAGCUAGUA---GCU------------CCAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.