miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7634 3' -53.7 NC_001973.1 + 2711 0.97 0.032558
Target:  5'- gCGUCGGCcGGGGUCGAUCGGGUUCAAg -3'
miRNA:   3'- -GCAGCCGaUCCCAGCUAGCUCAAGUU- -5'
7634 3' -53.7 NC_001973.1 + 2829 0.97 0.032558
Target:  5'- gCGUCGGCcGGGGUCGAUCGGGUUCAAg -3'
miRNA:   3'- -GCAGCCGaUCCCAGCUAGCUCAAGUU- -5'
7634 3' -53.7 NC_001973.1 + 8170 0.66 0.95804
Target:  5'- cCGUCGGC--GGGUCGAcggaCGAGcgCGc -3'
miRNA:   3'- -GCAGCCGauCCCAGCUa---GCUCaaGUu -5'
7634 3' -53.7 NC_001973.1 + 12141 0.76 0.519617
Target:  5'- gCGUCuGCcGGGGUCaAUCGAGUUCGAg -3'
miRNA:   3'- -GCAGcCGaUCCCAGcUAGCUCAAGUU- -5'
7634 3' -53.7 NC_001973.1 + 12217 0.89 0.097067
Target:  5'- aCGUgcCGGCcAGGGUCGAUCGAGUUCAAg -3'
miRNA:   3'- -GCA--GCCGaUCCCAGCUAGCUCAAGUU- -5'
7634 3' -53.7 NC_001973.1 + 12295 0.78 0.416002
Target:  5'- aCGUgcCGGCcAGGGUCaAUCGAGUUCAAa -3'
miRNA:   3'- -GCA--GCCGaUCCCAGcUAGCUCAAGUU- -5'
7634 3' -53.7 NC_001973.1 + 12376 0.87 0.126564
Target:  5'- gCGUCGGCaAGGGUCaAUCGAGUUCAAg -3'
miRNA:   3'- -GCAGCCGaUCCCAGcUAGCUCAAGUU- -5'
7634 3' -53.7 NC_001973.1 + 12454 0.98 0.025362
Target:  5'- gCGUCGGCcGGGGUCGAUCGAGUUCAAg -3'
miRNA:   3'- -GCAGCCGaUCCCAGCUAGCUCAAGUU- -5'
7634 3' -53.7 NC_001973.1 + 16389 1.07 0.007208
Target:  5'- gCGUCGGCUAGGGUCGAUCGAGUUCAAg -3'
miRNA:   3'- -GCAGCCGAUCCCAGCUAGCUCAAGUU- -5'
7634 3' -53.7 NC_001973.1 + 16465 0.78 0.416002
Target:  5'- aCGUgcCGGCcGGGGUCaAUCGAGUUCAAg -3'
miRNA:   3'- -GCA--GCCGaUCCCAGcUAGCUCAAGUU- -5'
7634 3' -53.7 NC_001973.1 + 16545 1.07 0.007208
Target:  5'- gCGUCGGCUAGGGUCGAUCGAGUUCAAg -3'
miRNA:   3'- -GCAGCCGAUCCCAGCUAGCUCAAGUU- -5'
7634 3' -53.7 NC_001973.1 + 20991 0.96 0.037388
Target:  5'- gCGUCGGCUAGGGUCaAUCGAGUUCAAg -3'
miRNA:   3'- -GCAGCCGAUCCCAGcUAGCUCAAGUU- -5'
7634 3' -53.7 NC_001973.1 + 21090 0.87 0.126564
Target:  5'- gCGUCGGCcGGGGUCaAUCGAGUUCAAg -3'
miRNA:   3'- -GCAGCCGaUCCCAGcUAGCUCAAGUU- -5'
7634 3' -53.7 NC_001973.1 + 21188 0.97 0.032558
Target:  5'- gCGUCGGCcGGGGUCGAUCGGGUUCAAg -3'
miRNA:   3'- -GCAGCCGaUCCCAGCUAGCUCAAGUU- -5'
7634 3' -53.7 NC_001973.1 + 71968 0.87 0.126564
Target:  5'- gCGUCGGCgAGGGUCaAUCGAGUUCAAa -3'
miRNA:   3'- -GCAGCCGaUCCCAGcUAGCUCAAGUU- -5'
7634 3' -53.7 NC_001973.1 + 72055 0.87 0.126564
Target:  5'- gCGUCGGCgAGGGUCaAUCGAGUUCAAg -3'
miRNA:   3'- -GCAGCCGaUCCCAGcUAGCUCAAGUU- -5'
7634 3' -53.7 NC_001973.1 + 72150 0.86 0.140544
Target:  5'- gCGUCGGCaaaGGUCGAUCGAGUUCAAa -3'
miRNA:   3'- -GCAGCCGaucCCAGCUAGCUCAAGUU- -5'
7634 3' -53.7 NC_001973.1 + 72235 0.78 0.416002
Target:  5'- aCGUgcCGGCcGGGGUCaAUCGAGUUCAAg -3'
miRNA:   3'- -GCA--GCCGaUCCCAGcUAGCUCAAGUU- -5'
7634 3' -53.7 NC_001973.1 + 127383 0.69 0.889074
Target:  5'- aCGUgcCGGCaAGGGgCaAUCGAGUUCAAa -3'
miRNA:   3'- -GCA--GCCGaUCCCaGcUAGCUCAAGUU- -5'
7634 3' -53.7 NC_001973.1 + 127461 0.78 0.416002
Target:  5'- aCGUgcCGGCaAGGGUCaAUCGAGUUCAAa -3'
miRNA:   3'- -GCA--GCCGaUCCCAGcUAGCUCAAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.