miRNA display CGI


Results 41 - 60 of 145 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7635 3' -60.1 NC_001973.1 + 7072 0.68 0.673269
Target:  5'- cGCCCuggucGAGCgCGAGUUgagucCGGCGcGCGCGa -3'
miRNA:   3'- -CGGG-----UUCGaGCUCGA-----GCCGCcUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 122530 0.68 0.673269
Target:  5'- uGUCgGGGgaCGAGCggCGGCGG-CGCu -3'
miRNA:   3'- -CGGgUUCgaGCUCGa-GCCGCCuGCGc -5'
7635 3' -60.1 NC_001973.1 + 111229 0.68 0.672289
Target:  5'- uGCCCGugcagAGCUacaCGGGCgagggggUCGacGCGGACGCGc -3'
miRNA:   3'- -CGGGU-----UCGA---GCUCG-------AGC--CGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 32077 0.68 0.663456
Target:  5'- aGCCCAg---CGAGaa-GGUGGGCGCGg -3'
miRNA:   3'- -CGGGUucgaGCUCgagCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 27845 0.68 0.653619
Target:  5'- gGCCCGguuGGC-CGGcGCU-GGCGGcCGCGg -3'
miRNA:   3'- -CGGGU---UCGaGCU-CGAgCCGCCuGCGC- -5'
7635 3' -60.1 NC_001973.1 + 87203 0.68 0.653619
Target:  5'- aGCCUAGGC--GAGCaCGGCGGugGa- -3'
miRNA:   3'- -CGGGUUCGagCUCGaGCCGCCugCgc -5'
7635 3' -60.1 NC_001973.1 + 72883 0.68 0.653619
Target:  5'- cGCCaCGcGCUCuGAacgcGCUCGuCGGGCGCGg -3'
miRNA:   3'- -CGG-GUuCGAG-CU----CGAGCcGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 115059 0.68 0.647709
Target:  5'- -gCCGAGCUCGAgcaaacccgauuccgGcCUCGGCGuccgccgaGGCGCGa -3'
miRNA:   3'- cgGGUUCGAGCU---------------C-GAGCCGC--------CUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 7250 0.68 0.633906
Target:  5'- -gUCGAGCagaugcgcagCGGGCUCGGCGcgcGGCGCGc -3'
miRNA:   3'- cgGGUUCGa---------GCUCGAGCCGC---CUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 52143 0.69 0.604343
Target:  5'- cGCCgCAGaaaCUCGGGCagcCGGUGGGCGCc -3'
miRNA:   3'- -CGG-GUUc--GAGCUCGa--GCCGCCUGCGc -5'
7635 3' -60.1 NC_001973.1 + 56403 0.69 0.604343
Target:  5'- gGCUCgAAGC-CGAGCUCGGUaucGGGCuCGg -3'
miRNA:   3'- -CGGG-UUCGaGCUCGAGCCG---CCUGcGC- -5'
7635 3' -60.1 NC_001973.1 + 30349 0.69 0.594518
Target:  5'- cGCgCAGGC-CGAGUUCGGgccgcCGG-CGCGg -3'
miRNA:   3'- -CGgGUUCGaGCUCGAGCC-----GCCuGCGC- -5'
7635 3' -60.1 NC_001973.1 + 120370 0.69 0.584719
Target:  5'- cGgCCAAGacggCGAGUUUGGCGGG-GCGa -3'
miRNA:   3'- -CgGGUUCga--GCUCGAGCCGCCUgCGC- -5'
7635 3' -60.1 NC_001973.1 + 23563 0.69 0.584719
Target:  5'- -aCCGcAGC-CG-GC-CGGCGGACGCGc -3'
miRNA:   3'- cgGGU-UCGaGCuCGaGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 106959 0.69 0.584719
Target:  5'- cGCgCCGGGCgc--GCUCGGCGuGCGCGc -3'
miRNA:   3'- -CG-GGUUCGagcuCGAGCCGCcUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 55187 0.69 0.580808
Target:  5'- cGCCCugcaucAGCUugaCGAGCguguucucgacgaCGGCGGAgGCGg -3'
miRNA:   3'- -CGGGu-----UCGA---GCUCGa------------GCCGCCUgCGC- -5'
7635 3' -60.1 NC_001973.1 + 60428 0.69 0.573977
Target:  5'- cGCUCGcuggaucAGCUCGAGC-CGcagcaguacGUGGACGCGc -3'
miRNA:   3'- -CGGGU-------UCGAGCUCGaGC---------CGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 95748 0.7 0.517332
Target:  5'- cGCCCGccgacaAGaUCGuGCUCGGCguggccauguacGGGCGCGg -3'
miRNA:   3'- -CGGGU------UCgAGCuCGAGCCG------------CCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 132417 0.7 0.51639
Target:  5'- gGCCCGgaucgagAGCgaggCGAGCgUGGUGGAgGCGc -3'
miRNA:   3'- -CGGGU-------UCGa---GCUCGaGCCGCCUgCGC- -5'
7635 3' -60.1 NC_001973.1 + 53402 0.7 0.507941
Target:  5'- cGCCCGccGGCaCGGGCggagCGcCGGGCGCGu -3'
miRNA:   3'- -CGGGU--UCGaGCUCGa---GCcGCCUGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.