miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7635 5' -58.5 NC_001973.1 + 14351 0.66 0.836843
Target:  5'- cUugGCGUGGUCgGcGUgGUCGA-CGGGg -3'
miRNA:   3'- -AugCGCACCGGgC-CA-CAGCUaGCUCa -5'
7635 5' -58.5 NC_001973.1 + 12137 0.66 0.828697
Target:  5'- uUACGCGUcuGCCgGG-GUCaAUCGAGUu -3'
miRNA:   3'- -AUGCGCAc-CGGgCCaCAGcUAGCUCA- -5'
7635 5' -58.5 NC_001973.1 + 130722 0.66 0.820379
Target:  5'- uUACGCGUcGGCCgGGg--CaAUCGAGUu -3'
miRNA:   3'- -AUGCGCA-CCGGgCCacaGcUAGCUCA- -5'
7635 5' -58.5 NC_001973.1 + 72051 0.66 0.811898
Target:  5'- uUACGCGUcGGCgaGG-GUCaAUCGAGUu -3'
miRNA:   3'- -AUGCGCA-CCGggCCaCAGcUAGCUCA- -5'
7635 5' -58.5 NC_001973.1 + 71964 0.66 0.811898
Target:  5'- uUACGCGUcGGCgaGG-GUCaAUCGAGUu -3'
miRNA:   3'- -AUGCGCA-CCGggCCaCAGcUAGCUCA- -5'
7635 5' -58.5 NC_001973.1 + 72220 0.66 0.806734
Target:  5'- gACGCGUaagauuuuacgugccGGCCgGG-GUCaAUCGAGUu -3'
miRNA:   3'- aUGCGCA---------------CCGGgCCaCAGcUAGCUCA- -5'
7635 5' -58.5 NC_001973.1 + 16450 0.66 0.806734
Target:  5'- gACGCGUaagauuuuacgugccGGCCgGG-GUCaAUCGAGUu -3'
miRNA:   3'- aUGCGCA---------------CCGGgCCaCAGcUAGCUCA- -5'
7635 5' -58.5 NC_001973.1 + 151376 0.67 0.758008
Target:  5'- uUACGCGUcGGCCgGG-GUCGucUGAGg -3'
miRNA:   3'- -AUGCGCA-CCGGgCCaCAGCuaGCUCa -5'
7635 5' -58.5 NC_001973.1 + 12372 0.67 0.748603
Target:  5'- uUACGCGUcGGCaaGG-GUCaAUCGAGUu -3'
miRNA:   3'- -AUGCGCA-CCGggCCaCAGcUAGCUCA- -5'
7635 5' -58.5 NC_001973.1 + 20987 0.67 0.748603
Target:  5'- uUACGCGUcGGCuaGG-GUCaAUCGAGUu -3'
miRNA:   3'- -AUGCGCA-CCGggCCaCAGcUAGCUCA- -5'
7635 5' -58.5 NC_001973.1 + 132398 0.67 0.748603
Target:  5'- gACGCGUcagauccuccucGGCCCGGa-UCGAgagCGAGg -3'
miRNA:   3'- aUGCGCA------------CCGGGCCacAGCUa--GCUCa -5'
7635 5' -58.5 NC_001973.1 + 59878 0.68 0.71009
Target:  5'- cGCGCGcGGCCCcaacggcggcgcGGUGUCGGccaacgCGAGc -3'
miRNA:   3'- aUGCGCaCCGGG------------CCACAGCUa-----GCUCa -5'
7635 5' -58.5 NC_001973.1 + 72146 0.69 0.650583
Target:  5'- uUACGCGUcGGCaaag-GUCGAUCGAGUu -3'
miRNA:   3'- -AUGCGCA-CCGggccaCAGCUAGCUCA- -5'
7635 5' -58.5 NC_001973.1 + 160823 0.69 0.640569
Target:  5'- uUACGCGUcGG-CCGGaGUCGAucaUCGAGg -3'
miRNA:   3'- -AUGCGCA-CCgGGCCaCAGCU---AGCUCa -5'
7635 5' -58.5 NC_001973.1 + 95836 0.71 0.512321
Target:  5'- gGCGCGgcgacgGGCCCGGUGcCGGgcacgUGGGa -3'
miRNA:   3'- aUGCGCa-----CCGGGCCACaGCUa----GCUCa -5'
7635 5' -58.5 NC_001973.1 + 12202 0.73 0.442233
Target:  5'- gACGCGUaggauuuuacgugccGGCCaGG-GUCGAUCGAGUu -3'
miRNA:   3'- aUGCGCA---------------CCGGgCCaCAGCUAGCUCA- -5'
7635 5' -58.5 NC_001973.1 + 21086 0.73 0.42124
Target:  5'- uUACGCGUcGGCCgGG-GUCaAUCGAGUu -3'
miRNA:   3'- -AUGCGCA-CCGGgCCaCAGcUAGCUCA- -5'
7635 5' -58.5 NC_001973.1 + 160567 0.77 0.241776
Target:  5'- uUACGCGUcGGCuaGG-GUCGAUCGAGUu -3'
miRNA:   3'- -AUGCGCA-CCGggCCaCAGCUAGCUCA- -5'
7635 5' -58.5 NC_001973.1 + 130898 0.77 0.241776
Target:  5'- uUACGCGUcGGCuaGG-GUCGAUCGAGUu -3'
miRNA:   3'- -AUGCGCA-CCGggCCaCAGCUAGCUCA- -5'
7635 5' -58.5 NC_001973.1 + 16541 0.77 0.241776
Target:  5'- uUACGCGUcGGCuaGG-GUCGAUCGAGUu -3'
miRNA:   3'- -AUGCGCA-CCGggCCaCAGCUAGCUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.